Hi Leo,
Great feedback, thanks.
On 04/19/2018 08:04 AM, Leonardo Collado Torres wrote:
This looks great Valerie, congrats to all of those involved in making
the web app! I hope that it leads to less questions/confusion.
Here are some minor comments, mostly about including some links/docs.
* Under the which packages we have access to, I noticed that it's not
showing the experimental data packages. I guess that's because they
are not in git yet (right?).
All software, data experiment and workflow packages are in git. You should be
able to see all associated with your account. One of the goals of the app was
to make package access more transparent which could help explain why a `push`
or `fetch` failed. We match your email to the username we have in the gitolite
packages.conf file. When I search packages.conf I see your username on these
packages:
~/git.bioconductor.org/admin/gitolite-admin >grep -B 1 'master.*collado-torres'
conf/packages.conf
repo packages/sva
RW master = j.leek l.collado-torres
--
repo packages/derfinder
RW master = l.collado-torres
--
repo packages/derfinderHelper
RW master = l.collado-torres
--
repo packages/derfinderPlot
RW master = l.collado-torres
--
repo packages/regionReport
RW master = l.collado-torres
--
repo packages/recount
RW master = l.collado-torres
--
repo packages/recountWorkflow
RW master = l.collado-torres
If there is a package missing that you should have access to let us know. Also
let me know if this differs from the list you saw when you were logged in.
* Under add an ssh key, the second option mentions "username.keys
files in your GitHub account". I hadn't heard about this before. Is
that file made automatically by editing
https://github.com/settings/keys? If there's a website that describes
this in more detail, I suggest including a link to it.
Yes, this is the standard keys file and is edited through github account
settings.
A link has been added to the github HOWTO page:
https://help.github.com/articles/adding-a-new-ssh-key-to-your-github-account/
* I've seen several emails where Nitesh and others ask developers to
check their SSH key using ssh -T
g...@git.bioconductor.org<mailto:g...@git.bioconductor.org>, so maybe
adding a reminder there would be good. Actually, maybe just include a
link to http://bioconductor.org/developers/how-to/git/faq/ from this
new site. By the way, that last link is not directly available from
http://bioconductor.org/developers/ (I think), I had to go to
http://bioconductor.org/developers/how-to/git/ then "See other
frequently asked questions."
I've added a link to the FAQ.
Since the FAQ is specific to version control it probably still belongs under
developers -> Git Source Control. Maybe we could change the title from 'See
other frequently asked questions' to just 'FAQ' or something more obvious.
* Typo: "Which packages do I have acces to?" --> access
Fixed.
Valerie
Best,
Leo
On Wed, Apr 18, 2018 at 12:53 PM, Obenchain, Valerie
<valerie.obench...@roswellpark.org><mailto:valerie.obench...@roswellpark.org>
wrote:
My last email didn't make it through to the list - trying again ...
The Web App for managing SSH keys is now available at
https://git.bioconductor.org/BiocCredentials/
Accounts have been created for all package maintainers. Note the central
identifier, i.e., how you login is your email. This email was taken from the
DESCRIPTION of your package or the Google Sheet if you registered a key there.
When you first visit the App you'll need to activate your account. An
activation link will be sent to your email. Once your account is activated you
can login. Trying to login without activation will lead to an error.
Let us know if you have any questions or problems.
This email message may contain legally privileged and/or confidential
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recipient(s), you are hereby notified that any disclosure, copying,
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