Hi Paul,
Luckily you caught this only 3 days after the release so renaming the
class now is probably ok and shouldn't be disruptive.
Cheers,
H.
On 05/04/2018 10:52 AM, Paul Shannon wrote:
I just discovered a class name collision - AnnotationTrack, in Gviz and my new
package igvR. wish to get wise counsel before proceeding with a fix. Here’s
the error message:
Found more than one class "AnnotationTrack" in cache;
using the first, from namespace ‘igvR' Also defined by ‘Gviz’
AnnotationTrack is an abstract base class in my new package igvR. The concrete
derived classes at present are
DataFrameAnnotationTrack
GRangesAnnotationTrack
UCSCBedAnnotationTrack
It would be easy for me to rename AnnotationTrack to “GenomeAnnotationTrack” or
even “igvAnnotationTrack”, thereby avoiding the name clash.
Reasonable? Fix in both release and devel?
Thanks -
- Paul
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Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
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E-mail: hpa...@fredhutch.org
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