Hi all, I recently upgraded R to 3.5 and use the new release of Bioconductor. The new version of S4Vectors seems to have problem showing a GRanges with a meta-data column of a data frame. One simplified example is:
gr <- GRanges('chr2', IRanges(1, 11)) gr$df <- data.frame(a = 32) rep(gr, 11) ## No error rep(gr, 12) ## Error when printing # GRanges object with 12 ranges and 1 metadata column: # Error in .Call2("vector_OR_factor_extract_ranges", x, start, width, PACKAGE = "S4Vectors") : # 'end' must be <= 'length(x)' Any help would be appreciated! Best regards, Jialin _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel