Hi all, I had a problem accessing git@bioconductor yesterday as well from a Windows 1803 PC. With the same PC it worked in March, but not now.
The last bit about the version is important since the OpenSSH form Microsoft is apparently in 1803 the default. I don't know, how the setup was previously. How I diagnosed the problem: - ssh-add -l does not show previously added keys (powershell or git bash terminal in rstudio) - re-adding keys works and is persistent after a restart without a .bashrc script or anything () - ssh -T works - git fetch does not The last two information means, that there are to key stores at play. There are two solutions, which worked for me: - copy and rename the key file to ~/.ssh/id_rsa (git finds it then and ask for passphrase. The config file in ~/.ssh/ was ignored) - change core.sshCommand option in .gitconfig to "C:/Windows/System32/OpenSSH/ssh.exe" (git uses the stored keys added with ssh-add) I don't know, where I found all the bits of information, but it was basically a lot of googling. I am also not sure, whether this a specific problem to my machine or a general Windows 1803 issue. I am also not sure, what the underlying cause for the behaviour is. It is more a fix for the symptom, not a cure. Hope this helps some people. Best regards, Felix --- Felix Ernst, PhD Université Libre de Bruxelles RNA MOLECULAR BIOLOGY BIOPARK Charleroi Brussels-South CAMPUS Rue Profs Jeener & Brachet, 12 B-6041 Charleroi - Gosselies BELGIUM +32(2)650 9774 (office phone) felix.er...@ulb.ac.be -----Original Message----- From: Bioc-devel <bioc-devel-boun...@r-project.org> On Behalf Of Turaga, Nitesh Sent: Freitag, 3. August 2018 12:21 To: Piotr <piotr.dittw...@gmail.com> Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] EXTERNAL: troubles with fetching Bioconductor github No, I'm not aware of any such issues. Maybe someone else in the community can chip in with some information about this. Best, Nitesh Get Outlook for Android<https://aka.ms/ghei36> ________________________________ From: Piotr <piotr.dittw...@gmail.com> Sent: Friday, August 3, 2018 5:22:23 AM To: Turaga, Nitesh Cc: bioc-devel@r-project.org Subject: Re: EXTERNAL: [Bioc-devel] troubles with fetching Bioconductor github Dear Nitesh, now works ok, although I did not change anything. maybe there is a time when I should not connect with Bioconductor git? Piotr On Thu, Aug 2, 2018 at 11:35 PM Turaga, Nitesh <nitesh.tur...@roswellpark.org<mailto:nitesh.tur...@roswellpark.org>> wrote: Please copy the result of this, git remote -v and send it to us so we have more information. http://bioconductor.org/developers/how-to/git/faq/ , check #14 Best, Nitesh > On Aug 2, 2018, at 5:14 PM, Piotr <piotr.dittw...@gmail.com<mailto:piotr.dittw...@gmail.com>> wrote: > > Dear All, > > I try to follow instruction here: > https://bioconductor.org/developers/how-to/git/sync-existing-repositor > ies/ > > however, I find the following > git fetch --all > Fetching origin > Fetching upstream > sign_and_send_pubkey: signing failed: agent refused operation > Permission denied (publickey). > fatal: Could not read from remote repository. > > Please make sure you have the correct access rights and the repository > exists. > error: Could not fetch upstream > > I have correct ssh keys and I am almost sure about 1 hr ago it worked. > What might have happened? > > I created new ssh key but it is still not working > > Kind regards, > Piotr > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
