Dear Bioconductor developers, In the CAGEr package, I created a "CAGEexp" class that extends "MultiAssayExperiment" without adding new slots, in order to define generic functions that require CAGEr-specific contents in the colData slot.
Unfortunately, when run in the development branch of Bioconductor, the CAGEexp objects lose their class when they are subsetted. Here is an example: > CAGEr::exampleCAGEexp A CAGEexp object of 4 listed (...) > CAGEr::exampleCAGEexp[,1] A MultiAssayExperiment object of 4 listed (...) This breaks examples in the package, as well as existing code. I am lost on how to troubleshoot this. May I ask for your help ? Best regards, -- Charles Plessy - - ~ ~ ~ ~ ~ ~~~~ ~ ~ ~ ~ ~ - - [email protected] Okinawa Institute of Science and Technology Graduate University Staff scientist in the Luscombe Unit - ~ - https://groups.oist.jp/grsu Toots from work - ~ ~~ ~ - https://mastodon.technology/@charles_plessy _______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
