We now see the changes on the git.bioconductor.org server. The changes should be reflected in tomorrows build report.
Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Farhad Shokoohi <shoko...@icloud.com> Sent: Wednesday, September 5, 2018 9:46:21 AM To: Shepherd, Lori Cc: Obenchain, Valerie; bioc-devel@r-project.org Subject: Re: [Bioc-devel] DMCHMM package new dev release Hello, I followed every command. Everything is up to date. MacBook-Pro:DMCHMM Farhad$ git remote add upstream g...@git.bioconductor.org<mailto:g...@git.bioconductor.org>:packages/DMCHMM.git fatal: remote upstream already exists. MacBook-Pro:DMCHMM Farhad$ git fetch --all Fetching origin Fetching upstream MacBook-Pro:DMCHMM Farhad$ git checkout master Switched to branch 'master' Your branch is up-to-date with 'origin/master'. MacBook-Pro:DMCHMM Farhad$ MacBook-Pro:DMCHMM Farhad$ git merge origin/master Already up-to-date. MacBook-Pro:DMCHMM Farhad$ git merge upstream/master Already up-to-date. MacBook-Pro:DMCHMM Farhad$ git push upstream master Everything up-to-date MacBook-Pro:DMCHMM Farhad$ git push origin master Everything up-to-date ��� Farhad Shokoohi, Ph.D. in Statistics shoko...@icloud.com<mailto:shoko...@icloud.com> On Sep 5, 2018, at 9:33 AM, Shepherd, Lori <lori.sheph...@roswellpark.org<mailto:lori.sheph...@roswellpark.org>> wrote: If you didn't set up your remotes this link may be useful https://bioconductor.org/developers/how-to/git/sync-existing-repositories/ Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Shepherd, Lori Sent: Wednesday, September 5, 2018 9:32:08 AM To: Obenchain, Valerie; Farhad Shokoohi Subject: Re: [Bioc-devel] DMCHMM package new dev release You need to commit changes to git.bioconductor.org<http://git.bioconductor.org> . There are no changes pushed to our Bioconductor server. Please ensure you have followed the instructions for setting up your remotes and pushed to the correct location https://bioconductor.org/developers/how-to/git/push-to-github-bioc/ I would keep track of the commands you try and if you get any ERRORs please post the commands with full output as a reply all. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org>> on behalf of Farhad Shokoohi via Bioc-devel <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> Sent: Wednesday, September 5, 2018 9:26:58 AM To: Obenchain, Valerie Cc: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> Subject: Re: [Bioc-devel] DMCHMM package new dev release Hello, I did everything mentioned in the link. I am also using Sourcetree app on Mac to commit changes but noting changes. Best, ��� Farhad Shokoohi, Ph.D. in Statistics shoko...@icloud.com<mailto:shoko...@icloud.com> > On Sep 4, 2018, at 11:59 AM, Obenchain, Valerie > <valerie.obench...@roswellpark.org> wrote: > > The builds start ~5pm EST daily. Commits made before that time will be > included in the nightly builds. The build report posts the following day (see > time at top of page): > > https://www.bioconductor.org/checkResults/release/bioc-LATEST/ > <https://www.bioconductor.org/checkResults/release/bioc-LATEST/> > https://www.bioconductor.org/checkResults/devel/bioc-LATEST/ > <https://www.bioconductor.org/checkResults/devel/bioc-LATEST/> > > If you don't see the package version you expected it's likely you missed the > cutoff or didn't push to the git.bioconductor.org server. See git > documentation here: > > https://www.bioconductor.org/developers/how-to/git/ > <https://www.bioconductor.org/developers/how-to/git/> > > Valerie > > > On 09/04/2018 07:58 AM, Farhad Shokoohi via Bioc-devel wrote: >> Hello, >> >> I have made some changes and updated my package DMCHMM and pushed it to >> GitHub. >> When the new update appears on bioconductor? >> >> Best, >> >> ��� >> Farhad Shokoohi, >> Ph.D. in Statistics >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org> mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> <https://stat.ethz.ch/mailman/listinfo/bioc-devel> >> > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]]
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