Dear Lori, I already foxed the issue in the devel branch which now gives a clean check: https://bioconductor.org/checkResults/3.8/bioc-LATEST/
The problema was due to a CRAN dependency no more available since July 20, 2018. Would you recommend fixing the same issue also in the current release branch? Or shall I leave it unchanged for consistency? All the best Francesco > On 6 Aug 2018, at 20:33, Shepherd, Lori <lori.sheph...@roswellpark.org> wrote: > > You can wait a little longer if you like. It might also be helpful to reach > out to the samr maintainers to see if they have any intention of bringing it > back onto CRAN. I would not recommend waiting too long, as the package will > need to be fixed before the next release to avoid deprecation in release Bioc > 3.8. While there is no official release date set - it is generally in October. > > Lori Shepherd > Bioconductor Core Team > Roswell Park Cancer Institute > Department of Biostatistics & Bioinformatics > Elm & Carlton Streets > Buffalo, New York 14263 > From: Bioc-devel <bioc-devel-boun...@r-project.org > <mailto:bioc-devel-boun...@r-project.org>> on behalf of Francesco Ferrari > <francesco.ferr...@ifom.eu <mailto:francesco.ferr...@ifom.eu>> > Sent: Monday, August 6, 2018 12:18:43 PM > To: bioc-devel@r-project.org <mailto:bioc-devel@r-project.org> > Subject: EXTERNAL: [Bioc-devel] Fwd: PREDA problems reported in the Multiple > platform build/check report for BioC 3.7 > > Looks like a CRAN package is no more available, and this is triggering a > problem with a “suggested” dependency > > * checking package dependencies ... ERROR > Package suggested but not available: ‘samr’ > > which indeed has been removed from CRAN on July 20: > > https://cran.r-project.org/web/packages/samr/index.html > <https://cran.r-project.org/web/packages/samr/index.html> > <https://cran.r-project.org/web/packages/samr/index.html > <https://cran.r-project.org/web/packages/samr/index.html>> > > > It may be a temporary issue (while the develpers fix it) or a more long term > one. > > Should I remove the dependency right away or wait a bit longer? > > > > > > > > > > Begin forwarded message: > > > > From: bbs-nore...@bioconductor.org <mailto:bbs-nore...@bioconductor.org> > > Subject: PREDA problems reported in the Multiple platform build/check > > report for BioC 3.7 > > Date: 6 Aug 2018 18:14:02 CEST > > To: francesco.ferr...@ifom.eu <mailto:francesco.ferr...@ifom.eu> > > > > [This is an automatically generated email. Please don't reply.] > > > > Hi PREDA maintainer, > > > > According to the Multiple platform build/check report for BioC 3.7, > > the PREDA package has the following problem(s): > > > > o ERROR for 'R CMD check' on malbec2. See the details here: > > > > https://master.bioconductor.org/checkResults/3.7/bioc-LATEST/PREDA/malbec2-checksrc.html > > > > <https://master.bioconductor.org/checkResults/3.7/bioc-LATEST/PREDA/malbec2-checksrc.html> > > > > Please take the time to address this by committing and pushing > > changes to your package at git.bioconductor.org > > <http://git.bioconductor.org/> > > > > Notes: > > > > * This was the status of your package at the time this email was sent to > > you. > > Given that the online report is updated daily (in normal conditions) you > > could see something different when you visit the URL(s) above, > > especially if > > you do so several days after you received this email. > > > > * It is possible that the problems reported in this report are false > > positives, > > either because another package (from CRAN or Bioconductor) breaks your > > package (if yours depends on it) or because of a Build System problem. > > If this is the case, then you can ignore this email. > > > > * Please check the report again 24h after you've committed your changes to > > the > > package and make sure that all the problems have gone. > > > > * If you have questions about this report or need help with the > > maintenance of your package, please use the Bioc-devel mailing list: > > > > https://bioconductor.org/help/mailing-list/ > > <https://bioconductor.org/help/mailing-list/> > > > > (all package maintainers are requested to subscribe to this list) > > > > For immediate notification of package build status, please > > subscribe to your package's RSS feed. Information is at: > > > > https://bioconductor.org/developers/rss-feeds/ > > <https://bioconductor.org/developers/rss-feeds/> > > > > Thanks for contributing to the Bioconductor project! > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org> mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > <https://stat.ethz.ch/mailman/listinfo/bioc-devel> > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. 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