To whom it may concern,
It has recently come to my attention that my package ( ChIPanalyser1.3.2 on
BioC 3.8) generates a build error.
However, I cannot seem to replicate that error on my local machine. The version
of the package that I have pushed towards both github
(patrickCNMartin/ChIPanalyser) and to bioconductor passes both R CMD build and
R CMD check on my local machine.
I suspected that my R version could be outdated ( I was running R3.4.1) however
even after updating to R3.5.1 and updating all relevant packages, I still
cannot replicate the error. ChIPanalyser still passes through Build and Check.
I also tested ChIPanalyser1.3.1 that is available on the devel branch to see if
that one would build on my local machine and it does (also passes R CMD check ).
Here is my sessionInfo()
R version 3.5.1 (2018-07-02)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] GenomicRanges_1.32.7 GenomeInfoDb_1.16.0 IRanges_2.14.12
[4] S4Vectors_0.18.3 BiocGenerics_0.26.0 BiocInstaller_1.30.0
loaded via a namespace (and not attached):
[1] zlibbioc_1.26.0 compiler_3.5.1 XVector_0.20.0
[4] tools_3.5.1 GenomeInfoDbData_1.1.0 RCurl_1.95-4.11
[7] bitops_1.0-6
I am currently out of ideas on how to replicate and fix the build error.
Thank you for your help.
Kind Regards
Patrick Martin
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