For which BiocManager::version() is this? BiocManager::valid() checks within
versions, and if there's no GenomicFeatures to reference, then there is no way
to flag it as out-of-date, sort of like a package you'd installed that was in
neither CRAN nor Bioconductor.
Though of course we'd like GenomicFeatures to be available in 3.8
Martin
On 11/2/18, 1:05 PM, "Bioc-devel on behalf of Kasper Daniel Hansen"
<bioc-devel-boun...@r-project.org on behalf of kasperdanielhan...@gmail.com>
wrote:
Seem broken in release.
And btw., because it is broken, when I run
BiocManager::valid()
it doesn't report GenomicFeatures as out of date, despite the fact that I
have version 1.33.2 installed, and there are newer versions in the 1.33.x
hierarchy and the "right" (but broken) version in Bioc 3.8 is 1.34.0.
Best,
Kasper
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