Hi Val, Thanks for the pointer. I now import RMariaDB in the NAMESPACE and the DESCRIPTION files. That seemed to solve the problem. When I updated from RMySQL, I failed to do that.
I changed .BBSoptions to simply “win” as you suggest, but just as a temporary measure. I don’t remember why we excluded the windows build - perhaps that is not necessary any more. After the package builds clean on macOS and linux, I will experiment with removing the win exclusions. Thank you! - Paul > On Nov 16, 2018, at 3:04 PM, Obenchain, Valerie > <valerie.obench...@roswellpark.org> wrote: > > Hi Paul, > > I can reproduce the error on my Linux system but not on the Mac and am > not sure why this is. Haven't tried Windows yet but from the looks of > the build report that one is fine too. > > R CMD check on Linux is failing on this line in > getRegulatoryRegions,HumanDHSFilter-method: > > db <- dbConnect(driver, user = user, host = host, dbname = dbname) > > Does this need a password (and probably DBI::dbConnect for completeness)? > > > There is a similar line in > getEncodeRegulatoryTableNames,HumanDHSFilter-method which isn't failing > R CMD check because the man page example is wrapped in /dontrun but it > does fail for me when run manually. I think this one may also need a > password - if you want to give me one off-line I can test this theory. > > db <- DBI::dbConnect(driver, user = user, host = host, dbname = dbname) > > I see a .BBSoptions in trena for exclusion on Windows. The reason it's > not being respected is because it's malformed and needs a space after > the comma between the platforms. Just curious, what was the reason for > excluding this on Windows? > > Val > > > > > On 11/15/18 9:23 AM, Paul Shannon wrote: >> Our package “trena” has had build errors these last two weeks. I have not >> yet been able to reproduce them on a macOS laptop. >> >> Would it be sensible to get the latest release and devel docker images for >> Bioconductor? Are they similar enough to the build system to give me good >> odds on reproducing the errors seen there? >> >> - Paul >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
