That command is located in the “how-to/git” (http://bioconductor.org/developers/how-to/git/), and it’s labelled "Push to GitHub and Bioconductor repositories” (https://bioconductor.org/developers/how-to/git/push-to-github-bioc/, see point number 6 on this page).
Happy new year! Feel free to ask any questions you may have. Nitesh > On Jan 2, 2019, at 12:45 PM, Karl Stamm <karl.st...@gmail.com> wrote: > > Wow that was easy. Thanks Nitesh. > > git push upstream master > Counting objects: 20, done. > Delta compression using up to 4 threads. > Compressing objects: 100% (20/20), done. > Writing objects: 100% (20/20), 5.33 KiB | 1.33 MiB/s, done. > Total 20 (delta 14), reused 0 (delta 0) > To git.bioconductor.org:packages/rgsepd > 4715839..b7aad7a master -> master > > I didn't find that command in the half-dozen different bioconductor > developers tutorials, and 'git push' just kept telling me everything was up > to date. I started this package a few years ago when Bioc used SVN, and have > been confused ever since they moved to git and recommended I make a github > account. > Looking forward to seeing tonight's build report. > > > On Wed, Jan 2, 2019 at 9:55 AM Turaga, Nitesh <nitesh.tur...@roswellpark.org> > wrote: > There is no bridge between GitHub and Bioconductor’s private git server. > > You have to push separately to the Bioconductor’s git server. Based on your > setup, you have to do, > > git push upstream master > > which, pushes to g...@git.bioconductor.org:packages/rgsepd. > > Please let me know if you have done this. > > Once you have done this, check https://bioconductor.org/developers/gitlog/ to > see if you commit is available on that list. > > Best, > > Nitesh > > > > > On Jan 2, 2019, at 10:49 AM, Karl Stamm <karl.st...@gmail.com> wrote: > > > > I think there's a disconnect between the github and the bioconductor build > > server. I cannot seem to get any updates to go into the Bioc devel > > packages. > > I have added a few things to v1.15.x and the Bioc website still lists me as > > 1.15.0. > > I have the workstation set up as such > > > > git remote -v > > > > origin g...@github.com:kstammits/rgsepd.git (fetch) > > > > origin g...@github.com:kstammits/rgsepd.git (push) > > > > upstream g...@git.bioconductor.org:packages/rgsepd (fetch) > > > > upstream g...@git.bioconductor.org:packages/rgsepd (push) > > > > and it claims 'everything is up to date' when I try to push. Github shows > > my changes, but they arent going into Bioc. How can I get the two > > connected? > > > > Thanks. > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
