The R-devel builders were actually updated yesterday so in the build report later today you should be able to see the updated R-devel version except on merida2 which we are not updating and will soon be retired for celaya2 mac builder.
Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <[email protected]> on behalf of Stadler, Michael <[email protected]> Sent: Tuesday, March 19, 2019 9:37:03 AM To: [email protected] Subject: [Bioc-devel] different generator for random integers in R-devel Dear maintainers of the BioC build system I have a shy questions regarding R-devel versions on the build machines: Currently, these use different versions of R-devel: malbec2 | Linux ... | R Under development (unstable) (2019-01-21 r75999) tokay2 | Windows ... | R Under development (unstable) (2019-03-09 r76216) merida2 | OS X ... | R Under development (unstable) (2018-11-27 r75683) celaya2 | OS X ... | R Under development (unstable) (2019-01-22 r76000) A recent change in R-devel (mostly in r76160, see https://github.com/wch/r-source/commit/e4acfd1f240a42b3fc1474a4d97017114e4eb053) has changed the behaviour of sample() (see also https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=17494 and https://stat.ethz.ch/pipermail/r-devel/2018-September/076817.html). In order to maintain backward compatibility, we are using RNGkind(..., sample.kind = "Rounding") to temporarily fall back to the behaviour of R-3.5. However, this will cause an error on R-devel < r76160, where RNGkind() does not yet understand the "sample.kind" argument (currently malbec2, merida2 and celaya2). This will obviously resolve itself once R-devel gets updated on the build machines, latest upon release of BioC 3.9. I am just curious whether R-devel will be updated on the builders before that, so this issue does not mask other potential problems in our package (QuasR). Thanks, Michael _______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
