Also, the reviewer might be able to glance at the code and help try to make it run more efficiently. See points on http://bioconductor.org/developers/how-to/efficient-code/ for things like vectorization and pre-allocation.
Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Shepherd, Lori <lori.sheph...@roswellpark.org> Sent: Friday, April 5, 2019 10:40:07 AM To: Bernat Gel Moreno; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Timeout in check for a new submission If the check time is passing on the other platforms, and the windows check isn't incredibly over the time limit, you should be okay. Talk with your reviewer but in general we would make an exception for this warning. Most of the time subsets of data can be used for examples and vignettes which also help to reduce the check time but still retain usefulness of an application, without knowing your data just an example instead of running over all chromosomes, limit to one smaller chromosome, etc... If this has already been done then you should be able to proceed through the submission process despite this warning. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Bernat Gel Moreno <b...@igtp.cat> Sent: Friday, April 5, 2019 10:27:21 AM To: bioc-devel@r-project.org Subject: [Bioc-devel] Timeout in check for a new submission Hi all, I've submitted a new package (CopyNumberPlots, issue 1076) and I have a problem. It keeps giving me a warning because on windows it takes more than 5 minutes to check (in Lunix it works with no problems). I've reduced the examples, removed part of the vignette... and in my machine it take 3min 20seconds to check, of which only 30seconds are spent in the examples and vignette and the other 2min 50 seconds are spent in all other checks. Other than reducing the vignette and examples I don't know how to reduce the cheking time. Any pointers? Thanks a lot Bernat _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
