my installation of Bioc 3.10 passes valid()
> ee = SummarizedExperiment(assay=data.matrix(mtcars)) > ee class: SummarizedExperiment dim: 32 11 metadata(0): assays(1): '' rownames(32): Mazda RX4 Mazda RX4 Wag ... Maserati Bora Volvo 142E rowData names(0): colnames(11): mpg cyl ... gear carb colData names(0): > colnames(ee)[1] = "foo" *Error in get(name, envir = asNamespace(pkg), inherits = FALSE) : * * object 'normalize_names_replacement_value' not found* > sessionInfo() R version 3.6.0 Patched (2019-05-06 r76460) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Sierra 10.12.6 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] parallel stats4 stats graphics grDevices utils datasets [8] methods base other attached packages: [1] SummarizedExperiment_1.15.1 DelayedArray_0.11.0 [3] BiocParallel_1.19.0 matrixStats_0.54.0 [5] Biobase_2.45.0 GenomicRanges_1.37.10 [7] GenomeInfoDb_1.21.1 IRanges_2.19.9 [9] S4Vectors_0.23.11 BiocGenerics_0.31.4 [11] rmarkdown_1.13 loaded via a namespace (and not attached): [1] Rcpp_1.0.1 knitr_1.23 XVector_0.25.0 [4] zlibbioc_1.31.0 lattice_0.20-38 tools_3.6.0 [7] grid_3.6.0 xfun_0.7 htmltools_0.3.6 [10] digest_0.6.19 Matrix_1.2-17 startup_0.12.0 [13] GenomeInfoDbData_1.2.1 BiocManager_1.30.4 bitops_1.0-6 [16] RCurl_1.95-4.12 evaluate_0.14 compiler_3.6.0 -- The information in this e-mail is intended only for the ...{{dropped:18}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel