Thank you. We will investigate further and let you know when we have a solution
on our end.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Jianhong Ou, Ph.D. <jianhong...@duke.edu>
Sent: Friday, June 14, 2019 9:57:47 AM
To: Shepherd, Lori; Michael Lawrence via Bioc-devel
Subject: Re: [Bioc-devel] CHECK ERROR in tokay1 for BioC 3.10
It looks like for arch'x64', there is no package org.Hs.eg.db.
Following is the whole error message:
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
trackViewer-package 22.44 0.07 24.88
viewTracks 13.97 0.02 14.84
parseWIG 12.81 0.00 12.94
browseTracks 12.04 0.00 12.69
geneModelFromTxdb 7.30 0.31 9.28
viewGene 5.15 0.11 5.26
** running examples for arch 'x64' ... ERROR
Running examples in 'trackViewer-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: trackViewer-package
> ### Title: Minimal designed plotting tool for genomic data
> ### Aliases: trackViewer trackViewer-package
>
> ### ** Examples
>
> library(TxDb.Hsapiens.UCSC.hg19.knownGene)
Loading required package: GenomicFeatures
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
> library(org.Hs.eg.db)
Error in library(org.Hs.eg.db) :
there is no package called 'org.Hs.eg.db'
Execution halted
On 6/14/19, 9:31 AM, "Bioc-devel on behalf of Jianhong Ou, Ph.D."
<bioc-devel-boun...@r-project.org on behalf of jianhong...@duke.edu> wrote:
It is for a long time. Since last development version (BioC 3.9).
Jianhong.
From: "Shepherd, Lori" <lori.sheph...@roswellpark.org>
Date: Friday, June 14, 2019 at 9:29 AM
To: "Jianhong Ou, Ph.D." <jianhong...@duke.edu>, Michael Lawrence via
Bioc-devel <bioc-devel@r-project.org>
Subject: Re: CHECK ERROR in tokay1 for BioC 3.10
How long as this ERROR occurred?
I just went onto tokay1 and was able to run library("org.Hs.eg.db") with
no issues. Let's wait and see if it clears up on todays build report. If not
we will investigate further.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Jianhong
Ou, Ph.D. <jianhong...@duke.edu>
Sent: Thursday, June 13, 2019 2:51:26 PM
To: Michael Lawrence via Bioc-devel
Subject: [Bioc-devel] CHECK ERROR in tokay1 for BioC 3.10
Hi,
The package trackViewer get check error in tokay1 (windows) say:
Error in library(org.Hs.eg.db) :
there is no package called 'org.Hs.eg.db'
How could I debug this error? Thank you for your help.
Yours Sincerely,
Jianhong Ou
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