Hi Paul, After a long hunt, the software package causing these daily reinstallations of BSgenome.Hsapiens.UCSC.hg38 has been identified and his maintainer contacted.
Sorry for the inconvenience this has caused so far. H. On 6/24/19 12:31, Paul Shannon wrote: > Warning in .seqlengths_TwoBitFile(x) : mustOpen: > Can't open > /home/biocbuild/bbs-3.9-bioc/R/library/BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit > to read: No such file or directory > Timing stopped at: 0.176 0 0.175 Error in .seqlengths_TwoBitFile(x) : > UCSC library operation failed > > I get these errors almost every day - today on malbec2 (ubuntu) and tokay2 > (windows). > > Any advice? > > - Paul > -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel