Hi All
The check of my package is failing locally due to the error in
"csaw::scaledAverage" function. Untill version 3.9, I used to pass a
DGElist object to this function call as follows:
/dat.y <- csaw::asDGEList(data, assay = assay.data)//# create DGElist
from SE object
//dat.y <- edgeR::estimateCommonDisp(dat.y)//# estimate dispersion
/
/data.ab <- csaw::scaledAverage(dat.y, scale = 1, prior.count = 1) # get
scaled average
/
Now in version 3.10 I get the following error:
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function ‘assay’ for signature
‘"DGEList", "character"’
Is CSAW not accepting DGElist anymore? How shall I replace this function
call here?
Thanks,
Vivek
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