Your package is building clean on the RELEASE_3_9 branch. What are you updating?
This is clean: http://bioconductor.org/checkResults/release/bioc-LATEST/MACPET/ The branch that is failing and that needs to be updated is the current Bioconductor devel (3.10) branch. That branch is the "master" branch on git.bioconductor.org http://bioconductor.org/checkResults/devel/bioc-LATEST/MACPET/ You would follow the steps provided here: http://bioconductor.org/developers/how-to/git/push-to-github-bioc/ Please check that the remotes are set up correctly and show the results of (Step 2) git remote -v Assuming you have your remotes set up correctly and you have merged with Bioconductor Please then try (Step 6) git push upstream master Please show any ERRORs or outputs you receive so we can better assist. I see you made at least one push to the master branch on Jun 25. Bioconductor will only recognize and propagate the package if there has been a valid version bump. For devel, Please make sure you commit any changes with an increase from 1.5.0 (current) to 1.5.1 or the Bioconductor package/pages will not be updated. Thank you, Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Ioannis Vardaxis <ioannis.varda...@ntnu.no> Sent: Monday, July 29, 2019 10:56:23 AM To: Martin Morgan <mtmorgan.b...@gmail.com> Cc: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] Problems with MACPET package I have been trying to push the updates on RELEASE_3_9, but they don’t seem to get updated. They are only updated on GitHub. Best, Ioannis 17. jul. 2019 kl. 12:50 skrev Martin Morgan <mtmorgan.b...@gmail.com<mailto:mtmorgan.b...@gmail.com>>: Bioc devel prepares for the next release of bioc, using the version of R that will be closest to that in use at the time of the release. The version of R that will be in use at the time of the next bioc release will be R-3.6.*. You should be using R-3.6 for bioc-devel. This is summarized at http://bioconductor.org/developers/how-to/useDevel/ ; if there are improvments to the wording there please feel free to provide a pull request on https://github.com/Bioconductor/bioconductor.org/blob/master/content/developers/how-to/useDevel.md 'RELEASE_3_10' as a branch does not exist because there has not yet been a release 3.10; the 'master' branch is the location where devel builds from. Martin On 7/17/19, 5:46 AM, "Bioc-devel on behalf of Ioannis Vardaxis" <bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org> on behalf of ioannis.varda...@ntnu.no<mailto:ioannis.varda...@ntnu.no>> wrote: My seesionInfo: sessionInfo() R Under development (unstable) (2019-07-11 r76823) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Mojave 10.14.5 And BiocManager::install("stringdist") Bioconductor version 3.10 (BiocManager 1.30.4), R Under development (unstable) (2019-07-11 r76823) Installing package(s) 'stringdist' Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/annotation/bin/macosx/el-capitan/contrib/3.7: cannot open URL 'https://bioconductor.org/packages/3.10/data/annotation/bin/macosx/el-capitan/contrib/3.7/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/experiment/bin/macosx/el-capitan/contrib/3.7: cannot open URL 'https://bioconductor.org/packages/3.10/data/experiment/bin/macosx/el-capitan/contrib/3.7/PACKAGES' Warning: unable to access index for repository https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.7: cannot open URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.7/PACKAGES' Package which is only available in source form, and may need compilation of C/C++/Fortran: ‘stringdist’ Do you want to attempt to install these from sources? (Yes/no/cancel) Yes Also, I cannot push to RELEASE_3_10 because I get error: $git checkout RELEASE_3_10 error: pathspec 'RELEASE_3_10' did not match any file(s) known to git Shouldn’t I use the R devel version? Best, Ioannis 15. jul. 2019 kl. 09:53 skrev Ioannis Vardaxis <ioannis.varda...@ntnu.no<mailto:ioannis.varda...@ntnu.no><mailto:ioannis.varda...@ntnu.no>>: My seesionInfo: sessionInfo() R Under development (unstable) (2019-07-11 r76823) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Mojave 10.14.5 And BiocManager::install("stringdist") Bioconductor version 3.10 (BiocManager 1.30.4), R Under development (unstable) (2019-07-11 r76823) Installing package(s) 'stringdist' Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/annotation/bin/macosx/el-capitan/contrib/3.7: cannot open URL 'https://bioconductor.org/packages/3.10/data/annotation/bin/macosx/el-capitan/contrib/3.7/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/experiment/bin/macosx/el-capitan/contrib/3.7: cannot open URL 'https://bioconductor.org/packages/3.10/data/experiment/bin/macosx/el-capitan/contrib/3.7/PACKAGES' Warning: unable to access index for repository https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.7: cannot open URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.7/PACKAGES' Package which is only available in source form, and may need compilation of C/C++/Fortran: ‘stringdist’ Do you want to attempt to install these from sources? (Yes/no/cancel) Yes Also, I cannot such to RELEASE_3_10 because I get error: $git checkout RELEASE_3_10 error: pathspec 'RELEASE_3_10' did not match any file(s) known to git [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. 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