Hi, Two options.
First option: import either purrr::reduce or GenomicRanges::reduce, and call the other with [pkg]::reduce. Second option: remove the import for both of these. Use purrr::reduce and GenomicRanges::reduce to call both functions. I think the second option leads to clearer code and would be my definite preference. On 12/09/2019 10:07, bio...@posteo.de wrote: > Dear all, > > I am developing a Bioconductor package and have a problem with two > methods which have the same name. I am using the reduce() function > from the R packages GenomicRanges and purrr. All methods from other > packages are imported with @importFrom in all of my functions. > > > During devtools::document() I get the following Warning: > > ... > > replacing previous import ‘GenomicRanges::reduce’ by ‘purrr::reduce’ > when loading ‘testPackage’ > > ... > > > Here are my NAMESPACE entries: > > # Generated by roxygen2: do not edit by hand > > export(mergeDataFrameList) > export(reduceDummy) > importFrom(GenomicRanges,GRanges) > importFrom(GenomicRanges,reduce) > importFrom(IRanges,IRanges) > importFrom(dplyr,"%>%") > importFrom(dplyr,left_join) > importFrom(dplyr,mutate) > importFrom(dplyr,pull) > importFrom(magrittr,"%<>%") > importFrom(purrr,reduce) > importFrom(tibble,tibble) > > > I am not using both reduce functions in the same function. To use the > GenomicRanges reduce function, I have to call this function like this: > GenomicRanges::reduce(). > > I understand the warning and why I have to call the reduce function > like this. Is there a solution for this problem? Compiling a R package > with warnings and calling functions like this is not the best way I > guess. > > I am using R version 3.6.1 (2019-07-05) > > Thanks for help! > > Best, > > Tobias > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
