>>>>> Martin Morgan
>>>>> on Wed, 25 Sep 2019 21:10:24 +0000 writes:
> Our recollection is that there is no 'flag' in R CMD build to create HTML
rather than PDF vignettes; without that it would be non-trivial to create html
output, e.g., links across pages. (I *think* the installed package html help
pages are generated on the fly...)
Yes, by default.
But you may (or not) remember that for R itself, I (and my
university, ETH Zurich) have provided static HTML help pages and
manuals since "forever" -> https://stat.ethz.ch/R-manual/
and my cron job that creates (and daily updates) them "starts
with"
../R/configure --with-prebuilt-html
As it does provide static html help pages for all "base R" +
Recommended packages,
see, e.g., https://stat.ethz.ch/R-manual/R-devel/doc/html/packages.html
it should not be hard to have it do the same for all other
packages in principle.
"The other R Core" Martin
Martin Maechler
ETH Zurich
> What is your experience with pkgdown?
> Martin
> On 9/25/19, 9:44 AM, "Bioc-devel on behalf of Laurent Gatto"
<bioc-devel-boun...@r-project.org on behalf of laurent.ga...@uclouvain.be>
wrote:
> I think this would be very useful. This is one of the reasons I create
pkgdown sites for my packages: manual pages, news and html vignettes are
readily available for all (including me) to browse.
> Best wishes,
> Laurent
> ________________________________________
> From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Ludwig
Geistlinger <ludwig.geistlin...@sph.cuny.edu>
> Sent: 25 September 2019 13:31
> To: bioc-devel@r-project.org
> Subject: [Bioc-devel] Reference manual as HTML
> Dear Bioc-Team,
> I repeatedly wondered whether it would be possible to display the
reference manual
> as HTML instead of PDF on a package's landing page. This is already
possible for vignettes.
> HTML reference manuals have at least two advantages:
> 1. links to functions of other package in the man pages of my package
would
> actually work. Links to functions / classes of other packages of the form
> \code{\link{p.adjust}}
> or
> \code{\linkS4class{SummarizedExperiment}}
> within the pdf reference manual currently point nowhere (bring me back to
the
> first page of the pdf). Within the html reference manual
> help(package="myPackage", help_type="html")
> these links work as expected, ie bring me to the help pages of functions
/ classes
> of other packages.
> 2. I could easily refer users to the documentation link of a specific
function
> (without them having to search through the pdf) such as "check the
documentation of
> the DESeq function here: https://rdrr.io/bioc/DESeq2/man/DESeq.html";.
> (where the link would be preferably:
bioconductor.org/packages/DESeq2/man/DESeq.html).
> Thank you,
> Ludwig
> [[alternative HTML version deleted]]
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