Sorry, indeed you have most of the information that I found through trial-error-stackoverflow already. Some of these lines when missed cause a lot of headache. Thanks for pointing again!
Best regards, Jelena Čuklina. On 15 Oct 2019, 15:46 +0200, Shepherd, Lori <lori.sheph...@roswellpark.org>, wrote: Have you looked at the extensive git documentation and the FAQ we already have for reference: http://bioconductor.org/developers/how-to/git/ There is a page dedicated to BFG: http://bioconductor.org/developers/how-to/git/remove-large-data/ Nitesh and Herve also commented relating to this back in Sept? https://stat.ethz.ch/pipermail/bioc-devel/2019-September/015609.html Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Cuklina Jelena <jelena.chukl...@imsb.biol.ethz.ch> Sent: Tuesday, October 15, 2019 9:35 AM To: Michael Lawrence via Bioc-devel <bioc-devel@r-project.org>; Shepherd, Lori <lori.sheph...@roswellpark.org> Subject: Re: hook declined Thanks Lori, may I ask to add more clarifications to git-related issues on bioconductor submission pages? E.g. once explaining what can and cannot be done with bioconductor branch (many git commands cannot be executed). I also believe it would be good to have more advice how to handle bfg “correctly”, e.g. what it does exactly and how to keep the remotes in sync if bfg is applied locally. History re-writing is not a good practice, so it would be good to understand Bioconductors reasons to recommend it, in addition to practical implications. Git versioning with remotes is not straightforward, especially for git-newbies, which many biopackage developers are. Best regards, Jelena Čuklina. On 15 Oct 2019, 13:53 +0200, Shepherd, Lori <lori.sheph...@roswellpark.org>, wrote: There is no RELEASE_3_10 branch yet. The master branch is the devel 3.10 branch. Once we make that branch we will announce it. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Cuklina Jelena <jelena.chukl...@imsb.biol.ethz.ch> Sent: Tuesday, October 15, 2019 3:33 AM To: Michael Lawrence via Bioc-devel <bioc-devel@r-project.org> Subject: [Bioc-devel] hook declined Dear Bioconductor team, my submission to Release_3_10 branch is declined. Could you please tell why is that? I can’t submit to master as I need repo reset due to large file cleaning and history re-writing, is this issue related? Or is it the deadline missed? Error message: ! [remote rejected] RELEASE_3_10 -> RELEASE_3_10 (hook declined) error: failed to push some refs to 'g...@git.bioconductor.org<mailto:g...@git.bioconductor.org>:packages/proBatch.git' Best regards, Jelena Čuklina. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
