Dear Lori, dear Bioconductor team,
I have re-cleaned the repository, could you please run the tests again and
reset the upstream?
Thank you very much for the support.
Best regards,
Jelena Čuklina.
On 16 Oct 2019, 16:01 +0200, Shepherd, Lori <lori.sheph...@roswellpark.org>,
wrote:
Hi Jelena,
I was running some checks on your repository before I reset it. It looks like
you cleaned the repository but the the repository you cleaned is not from our
git.bioconductor.org. This is evident as the release commits that occur are
missing from your current repo
```
git log --all --grep "RELEASE"
```
Displays nothing but it should be in sync with our git.bioconductor.org
repository and have the commits from last release.
Something like
```
Author: Nitesh Turaga <nitesh.tur...@gmail.com>
Date: Thu May 2 12:14:38 2019 -0400
bump x.y.z versions to odd y after creation of RELEASE_3_9 branch
```
You will need to merge the master branch from the upstream remote of
bioconductor and clean the repo as necessary from there.
The two most relevant help files:
http://bioconductor.org/developers/how-to/git/sync-existing-repositories/
http://bioconductor.org/developers/how-to/git/remove-large-data/
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Shepherd, Lori
<lori.sheph...@roswellpark.org>
Sent: Wednesday, October 16, 2019 7:19 AM
To: Cuklina Jelena <jelena.chukl...@imsb.biol.ethz.ch>; Michael Lawrence via
Bioc-devel <bioc-devel@r-project.org>; Jelena Chuklina
<chuklina.jel...@gmail.com>
Subject: Re: [Bioc-devel] package has been cleaned for large data files and
needs to be reset.
I am working on the reset now. I will email again when we think it is set.
Sorry for the delay.
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Cuklina Jelena
<jelena.chukl...@imsb.biol.ethz.ch>
Sent: Wednesday, October 16, 2019 5:56 AM
To: Michael Lawrence via Bioc-devel <bioc-devel@r-project.org>; Jelena Chuklina
<chuklina.jel...@gmail.com>
Subject: Re: [Bioc-devel] package has been cleaned for large data files and
needs to be reset.
Dear Bioconductor team,
May I ask on the process of the package reset? How do I know the Bioconductor
upstream of my project has been updated/failed?
Thank you very much for your work.
Best regards,
Jelena �uklina.
On 14 Oct 2019, 18:49 +0200, Jelena Chuklina <chuklina.jel...@gmail.com>, wrote:
Dear Bioconductor team,
We�ve cleaned the updated repository for large files and duplicates and would
like to reset the upstream master branch as well as release branch.
Could you please help with that?
GitHub version of the package is: https://github.com/symbioticMe/proBatch
Thank you in advance!
Best regards,
Jelena �uklina.
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