Thanks for the answer. However replacing it resulted in another error for me:
Quitting from lines 2-41 (MACPET.Rmd)
Error in doc_date() : could not find function "doc_date"
Calls: <Anonymous> ... inline_exec -> hook_eval -> withVisible -> eval -> eval
Execution halted
Should I wait until BiocStyle is updated?
Best,
Ioannis
________________________________
Fra: Martin Morgan <mtmorgan.b...@gmail.com>
Sendt: søndag 1. desember 2019 11:51
Til: Benjamin Jean-Marie Tremblay <b2tremb...@uwaterloo.ca>; Ioannis Vardaxis
<iov...@hotmail.com>
Kopi: bioc-devel@r-project.org <bioc-devel@r-project.org>
Emne: Re: [Bioc-devel] Error in Vignette of package
Thanks for that insight, we'll try to solve the issue with BiocStyle.
Martin
On 12/1/19, 1:32 AM, "Bioc-devel on behalf of Benjamin Jean-Marie Tremblay"
<bioc-devel-boun...@r-project.org on behalf of b2tremb...@uwaterloo.ca> wrote:
I’ve been getting the exact same error for compiling the Rmarkdown
vignettes in my own package. Some partial testing before the weekend
revealed that in my case the error could be circumvented simply by not
using
output: BiocStyle::pdf_document
but instead
output: pdf_document
in the yaml header. I’m not quite sure why, but when BiocStyle is used
some of the latex code for code highlighting is repeated, leading to the
'already defined' error. I’ve not updated my package since before this
error started.
BT
> Le 30 nov. 2019 à 10:25, Ioannis Vardaxis <iov...@hotmail.com> a écrit :
>
> Hey,
>
> I am trying to build my package Vegnette and I get the following error:
>
> ! LaTeX Error: Command \VerbBar already defined.
> Or name \end... illegal, see p.192 of the manual.
>
> I tried to find what this means with no luck.
>
> Best,
> Ioannis
>
>
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>
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