It might be a combination of both! Thanks for the information.
Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Andris Jankevics <a.jankev...@bham.ac.uk> Sent: Thursday, February 6, 2020 11:38 AM To: Shepherd, Lori <lori.sheph...@roswellpark.org>; chris.r.joh...@gmail.com <chris.r.joh...@gmail.com>; bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] ptime ERROR My apologies for pointing in wrong direction, but I was getting the same error message in tests and it took me a while to figure out why. https://github.com/r-lib/devtools/issues/2167 [https://avatars0.githubusercontent.com/u/22618716?s=400&v=4]<https://github.com/r-lib/devtools/issues/2167> devtools:test() works, but devtools:check() fail on functions with if(class(x) == "type") conditional. · Issue #2167 · r-lib/devtools · GitHub<https://github.com/r-lib/devtools/issues/2167> github.com Hi. I and @grlloyd have stumbled across strange behaviour of the devtools package using R-devel (4.0.0) and the latest devtools package. I am using R command class to determine what data structure object belong to. Based on the object ty... BW, Andris ________________________________ From: lori.sheph...@roswellpark.org <lori.sheph...@roswellpark.org> Sent: 06 February 2020 16:21:14 To: Andris Jankevics (Biosciences); chris.r.joh...@gmail.com; bioc-devel@r-project.org Subject: Re: [Bioc-devel] ptime ERROR Actually it looks like it has to do with having a conditional > 1 rather than a class() == There is this post: https://stat.ethz.ch/pipermail/bioc-devel/2020-January/016081.html And this: http://bioconductor.org/developers/how-to/troubleshoot-build-report/ Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Andris Jankevics <a.jankev...@bham.ac.uk> Sent: Thursday, February 6, 2020 11:17 AM To: chris.r.joh...@gmail.com <chris.r.joh...@gmail.com>; bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] ptime ERROR Hi Chris, Error message is caused by changes in R 4.0.0. You can find more details here https://developer.r-project.org/Blog/public/2019/11/09/when-you-think-class.-think-again/index.html. In short you have to check all cases where you are using `class()` in your code. BW, Andris ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of chris.r.joh...@gmail.com <chris.r.joh...@gmail.com> Sent: 06 February 2020 16:09:07 To: bioc-devel@r-project.org Subject: Re: [Bioc-devel] ptime ERROR This is the error, sorry my hand slipped when writing the last email. Thank you. http://bioconductor.org/checkResults/devel/bioc-LATEST/M3C/malbec2-checksrc.html checking examples ... ERROR Running examples in �M3C-Ex.R� failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") On Thu, 6 Feb 2020 at 16:07, Christopher John <chris.r.joh...@gmail.com> wrote: > Hi > > I was wondering will this error disappear by itself? Because I did not > change the package. > > Thanks, > > Chris > > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]] This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
