This warning
* checking whether package 'ttBulk' can be installed ... WARNING
Found the following significant warnings:
Rd warning:
C:/Users/pkgbuild/AppData/Local/Temp/Rtmp6Js8e8/R.INSTALL1ddcdee5581/ttBulk/man/reexports.Rd:19:
file link '%>%' in package 'magrittr' does not exist and so has been treated
as a topic
See
'C:/Users/pkgbuild/packagebuilder/workers/jobs/1330/8048f88/ttBulk.Rcheck/00install.out'
for details.
is actually about the documentation for '%>%'. In your previous 'man' page you
had
\code{\link[magrittr]{\%>\%}}
which from reading 'Writing R Extensions' RShowDoc("R-exts") section 2.5
'Cross-references' indicates that you're trying to link to an html page named
'%>%.html' in the magrittr package, but actually the man page is 'pipe.html'
(e.g., by using help.start() and browsing manually to the help page). While
it's possible to link to that help page, you should instead just
\code{\link{\%>\%}} and R (possibly with the user choosing the package) will
generate the correct link.
Your package is too deep into the roxygen foo for me to know what you need to
do to generate the appropriate link (or even where the link is generated...);
maybe there's a roxygen expert on the mailing list who can help (or you can
perhaps post here where you generate the reexports.Rd page from).
Also, your github repository seems VERY LARGE (I lost patience trying to clone
it, although my current link is quite slow); this
http://bioconductor.org/developers/how-to/git/remove-large-data/ might provide
some hints for removing large commits.
Hope that helps,
Martin
On 2/12/20, 9:51 PM, "Bioc-devel on behalf of stefano"
<bioc-devel-boun...@r-project.org on behalf of mangiolastef...@gmail.com> wrote:
Hello Community,
The CHECK Windows server gives me a warning when I try to reexport an
existing operator magrittr::`%>%`
```
#' @importFrom magrittr %>%
#' @export
magrittr::`%>%`
```
okay2 Windows Server 2012 R2 Standard/x64
OK
WARNINGS
OK
OK
malbec2 Linux (Ubuntu 18.04.3 LTS)/x86_64
OK
OK
skipped
OK
Here is the log
http://bioconductor.org/spb_reports/ttBulk_buildreport_20200212081044.html#tokay2_check_anchor
I looked online but I could not find a definitive answer. An advice will be
highly appreciated.
Thanks!
Best wishes.
*Stefano *
Stefano Mangiola | Postdoctoral fellow
Papenfuss Laboratory
The Walter Eliza Hall Institute of Medical Research
+61 (0)466452544
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