Hi, the source package on 3.11/bioc/html/atSNP.html will only be updated with a new one if all checks succeed. This prevents that you download a broken package.
Nowadays one would call that a continuous integration pipeline, but the BioC team already does that since, um, more than a decade ;-) Yours, Steffen On Mon, 2020-02-17 at 07:44 +0000, Shin, Sunyoung wrote: > Hello Steffen, > > Thank you for the response. You are right, and I also recognized it. > However, I don’t see the updates from the source package I downloaded > from the package webpage at > http://bioconductor.org/packages/3.11/bioc/html/atSNP.html. I updated > both DESCRIPTION and graphic.R, but neither were updated. > > > Best, > Sunyoung > > > On Feb 17, 2020, at 1:38 AM, Neumann, Steffen < > > sneum...@ipb-halle.de> wrote: > > > > Hi, > > > > please have a look at the build report first: > > https://nam02.safelinks.protection.outlook.com/?url=http%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2FatSNP%2F&data=02%7C01%7CSunyoung.Shin%40utdallas.edu%7C5f2f92f942374791fab308d7b37c5b94%7C8d281d1d9c4d4bf7b16e032d15de9f6c%7C0%7C1%7C637175219027370173&sdata=ygVFK7QyLbTTmaq3%2B54W5%2Fg7CL2w0YBMdJf4ZgHImCw%3D&reserved=0 > > > > where your commit 2020-02-12 has been picked up. > > The check has an ERROR, most likely in the examples > > to plotMotifMatch(). > > > > Also, I guess the version 1.3.0 was the version number > > bumped after the last BioC release, so consider > > to bump atSNP to 1.3.1 with you next commit. > > > > Hope that helped, > > > > Yours, > > Steffen > > > > > > On Mon, 2020-02-17 at 05:10 +0000, Shin, Sunyoung wrote: > > > Dear all, > > > > > > I used "git push upstream master” to commit changes for atSNP > > > package > > > to Bioconductor 4 days ago. But, Bioconductor does not take the > > > updated version, but sticks with the old version of the package, > > > which I committed in October. Does someone have an idea about how > > > to > > > fix it? Thanks. > > > > > > > > > Best, > > > Sunyoung > > > _______________________________________________ > > > Bioc-devel@r-project.org mailing list > > > https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel&data=02%7C01%7CSunyoung.Shin%40utdallas.edu%7C5f2f92f942374791fab308d7b37c5b94%7C8d281d1d9c4d4bf7b16e032d15de9f6c%7C0%7C1%7C637175219027370173&sdata=nB10%2BrZJCkXf5CWqHXyQxqaQgIUvP4%2FnkRhLzAwiLnE%3D&reserved=0 > > -- > > > > Current bits of interest: > > > > * Computational Metabolomics PhD Position @ IPB > > > > https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.ipb-halle.de%2Fen%2Fcareer%2Fjob-vacancies%2Fjoboffer-detail%2Fwissenschaftlichen-mitarbeiterin-doktorandin-bioinformatikmetabolomics-mwd%2F&data=02%7C01%7CSunyoung.Shin%40utdallas.edu%7C5f2f92f942374791fab308d7b37c5b94%7C8d281d1d9c4d4bf7b16e032d15de9f6c%7C0%7C1%7C637175219027370173&sdata=5ukkqm7owpb0KVwgtS8loZvZ7WmuLKmgfwzgrkihVb0%3D&reserved=0 > > > > > > * Leibniz Plant Biochemistry Symposium, 14./15.05.2020, Halle > > > > https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fevents.ipb-halle.de%2Fevent%2F60%2F&data=02%7C01%7CSunyoung.Shin%40utdallas.edu%7C5f2f92f942374791fab308d7b37c5b94%7C8d281d1d9c4d4bf7b16e032d15de9f6c%7C0%7C1%7C637175219027370173&sdata=%2Bjxec3fj9e%2F%2Fd7CvOueC%2FAWZ%2BGYiRC7Xpx9%2FSanT5P4%3D&reserved=0 > > > > * HUPO PSI spring meeting, 23.-25.03.2020, San Diego, CA > > > > https://nam02.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psidev.info%2Fhupo-psi-meeting-2020&data=02%7C01%7CSunyoung.Shin%40utdallas.edu%7C5f2f92f942374791fab308d7b37c5b94%7C8d281d1d9c4d4bf7b16e032d15de9f6c%7C0%7C1%7C637175219027370173&sdata=cAjXisCXzOCA9z%2FUXbSi%2F2Oz83vC6fEMlRL6WBH1uTQ%3D&reserved=0 > > > > --- > > IPB Halle AG Massenspektrometrie & Bioinformatik > > Dr. Steffen Neumann > > https://nam02.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.IPB-Halle.DE&data=02%7C01%7CSunyoung.Shin%40utdallas.edu%7C5f2f92f942374791fab308d7b37c5b94%7C8d281d1d9c4d4bf7b16e032d15de9f6c%7C0%7C1%7C637175219027370173&sdata=3jUg1A%2B3n8KpUR%2FBJEwQVQ%2FRcjf6KU4Ilm2kQUl3XP0%3D&reserved=0 > > Weinberg 3 Tel. +49 (0) 345 5582 - 1470 > > 06120 Halle +49 (0) 345 5582 - 0 > > sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409 > > -- Current bits of interest: * Computational Metabolomics PhD Position @ IPB https://www.ipb-halle.de/en/career/job-vacancies/joboffer-detail/wissenschaftlichen-mitarbeiterin-doktorandin-bioinformatikmetabolomics-mwd/ * Leibniz Plant Biochemistry Symposium, 14./15.05.2020, Halle https://events.ipb-halle.de/event/60/ * HUPO PSI spring meeting, 23.-25.03.2020, San Diego, CA http://www.psidev.info/hupo-psi-meeting-2020 --- IPB Halle AG Massenspektrometrie & Bioinformatik Dr. Steffen Neumann http://www.IPB-Halle.DE Weinberg 3 Tel. +49 (0) 345 5582 - 1470 06120 Halle +49 (0) 345 5582 - 0 sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
