Hi, I recently received error messages for 2 packages. As a worst-case-scenario, it is acceptable if the sRAP package had to be removed. However, I need to resolve the issue for the COHCAP package.
This is odd because I don’t think I have updated either package in the last year or so. In fact, if I check the CHANGES file in the COHCAP package, the last change I manually noted was v1.29.3, which I can see was added to the GitHub version of the code on 3/2/2019: https://github.com/cwarden45/COHCAP/commits/master/CHANGES I can successfully install the package, with either the GitHub or Bioconductor instructions. However, I want to correct the error because I don’t want the Bioconductor package to be removed. I had some dependency issues on some systems related to the PDF generation (which I would usually ignore). However, if I run “R CMD build” on an Ubuntu system where I have all dependencies installed, I don’t get any error message: $ R CMD build COHCAP * checking for file ‘COHCAP/DESCRIPTION’ ... OK * preparing ‘COHCAP’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... OK Warning: ‘inst/doc’ files ‘COHCAP.Rnw’, ‘COHCAP.pdf’, ‘COHCAP.R’ ignored as vignettes have been rebuilt. Run R CMD build with --no-build-vignettes to prevent rebuilding. * cleaning src * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * building ‘COHCAP_1.33.0.tar.gz’ I am using the development version, which I thought should match what was being tested for the BioC 3.11 error message. Can you please either tell me what I need to do to reproduce (and then correct) this error, or confirm that it is OK to ignore the e-mails that I have received recently? Thank You, Charles Charles Warden, Bioinformatics Specialist Integrative Genomics Core City of Hope National Medical Center Shamrock Monrovia Building (655 Huntington Dr, Monrovia, CA, 91016) Room 1086 Internal Ext: 80375 | Direct: 626-218-0375 Work-From-Home Cell: 404-316-0012 ---------------------------------------------------------------------- ------------------------------------------------------------ -SECURITY/CONFIDENTIALITY WARNING- This message and any attachments are intended solely for the individual or entity to which they are addressed. This communication may contain information that is privileged, confidential, or exempt from disclosure under applicable law (e.g., personal health information, research data, financial information). Because this e-mail has been sent without encryption, individuals other than the intended recipient may be able to view the information, forward it to others or tamper with the information without the knowledge or consent of the sender. If you are not the intended recipient, or the employee or person responsible for delivering the message to the intended recipient, any dissemination, distribution or copying of the communication is strictly prohibited. If you received the communication in error, please notify the sender immediately by replying to this message and deleting the message and any accompanying files from your system. If, due to the security risks, you do not wish to receive further communications via e-mail, please reply to this message and inform the sender that you do not wish to receive further e-mail from the sender. (LCP301) ------------------------------------------------------------ [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
