Does this work for you? https://github.com/mythosil/homebrew-libsbml
Michael On Fri, Apr 3, 2020 at 2:20 AM Martin Morgan <mtmorgan.b...@gmail.com> wrote: > The INSTALL file for rsbml says > > ~/b/git/rsbml master$ cat INSTALL > ... > > To build rsbml on the Mac, first install libsbml with: > `brew install homebrew/science/libsbml`. > > but > > ~/b/git/rsbml master$ brew install homebrew/science/libsbml > Error: homebrew/science was deprecated. This tap is now empty as all its > formulae were > migrated. > > If I download and build from source > > curl -O > https://s3.amazonaws.com/linux-provisioning/libSBML-5.10.2-core-src.tar.gz > tar xzf libSBML-5.10.2-core-src.tar.gz > ./configure --enable-layout > make > make install > > when I install rsbml things go well enough until > > ** testing if installed package can be loaded from temporary location > Error: package or namespace load failed for ‘rsbml’: > .onLoad failed in loadNamespace() for 'rsbml', details: > call: dyn.load(file, DLLpath = DLLpath, ...) > error: unable to load shared object > > '/Users/ma38727/Library/Caches/pkgserver/library/78c7d37adb9cb6df9d8f1ec10fed882b/00LOCK-rsbml/00new/rsbml/libs/rsbml.so': > > dlopen(/Users/ma38727/Library/Caches/pkgserver/library/78c7d37adb9cb6df9d8f1ec10fed882b/00LOCK-rsbml/00new/rsbml/libs/rsbml.so, > 6): Symbol not found: _ASTNode_isName > Referenced from: /usr/local/lib/libsbml.5.dylib > Expected in: flat namespace > in /usr/local/lib/libsbml.5.dylib > Error: loading failed > Execution halted > > Any hints? > > Thanks, Martin > -- Michael Lawrence Senior Scientist, Bioinformatics and Computational Biology Genentech, A Member of the Roche Group Office +1 (650) 225-7760 micha...@gene.com Join Genentech on LinkedIn | Twitter | Facebook | Instagram | YouTube [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
