Hi Kieran, It looks like your Travis build is failing because of your vignettes:
Error: processing vignette 'contiBAIT.Rnw' failed with diagnostics: 6542 chunk 13 (label = orderAllLinkageGroupsExampleb) 6543Error in if (spearmanCor < 0) { : missing value where TRUE/FALSE needed 6544 6545 The BioC Test servers point to the same vignette issue. Your R CMD build runs may have --no-build-vignettes or --no-vignettes by default. Best, Jean On Apr 24, 2020, at 3:11 PM, Kieran O'Neill <kone...@bcgsc.ca<mailto:kone...@bcgsc.ca>> wrote: A package I maintain, contiBAIT, is failing to build on the BioC test servers. https://bioconductor.org/checkResults/3.11/bioc-LATEST/contiBAIT/malbec2-buildsrc.htmlv It's also failing on my Travis build set up on GitHub https://travis-ci.org/github/oneillkza/ContiBAIT/builds/674999114 But I can't reproduce this in my local environment. R CMD build runs just fine against the source, with no errors. I'm even running Ubuntu 18.04. Can anyone suggest a relatively easy way to exactly reproduce the build environment on Travis or the BioC build servers so I can reproduce this error and debug it? Thanks! [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel