Hi Bioc-devel, I think that there's a potential issue with either GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene or an upstream package.
On a fresh R 4.0 Windows installation with BioC 3.11, I get the following error message when installing TxDb.Hsapiens.UCSC.hg19.knownGene as shown at https://github.com/leekgroup/derfinderPlot/runs/618370463?check_suite_focus=true#step:13:1225. 2020-04-25T18:32:26.0765748Z * installing *source* package 'TxDb.Hsapiens.UCSC.hg19.knownGene' ... 2020-04-25T18:32:26.0769789Z ** using staged installation 2020-04-25T18:32:26.1001400Z ** R 2020-04-25T18:32:26.1044734Z ** inst 2020-04-25T18:32:26.2061605Z ** byte-compile and prepare package for lazy loading 2020-04-25T18:32:30.7296724Z ##[error]Error: package or namespace load failed for 'GenomicFeatures' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): 2020-04-25T18:32:30.7305615Z ERROR: lazy loading failed for package 'TxDb.Hsapiens.UCSC.hg19.knownGene' 2020-04-25T18:32:30.7306686Z * removing 'D:/a/_temp/Library/TxDb.Hsapiens.UCSC.hg19.knownGene' 2020-04-25T18:32:30.7307196Z there is no package called 'tibble' 2020-04-25T18:32:30.7310561Z ##[error]Error: package 'GenomicFeatures' could not be loaded 2020-04-25T18:32:30.7311805Z Execution halted >From looking at the bioc-devel landing pages for both GenomicFeatures and TxDb.Hsapiens.UCSC.hg19.knownGene, I see that tibble is not listed as a dependency for either package. Best, Leo _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
