Thank you!
Found it: "flowCore::description" is old, "flowCore::keyword" is replacement.
Best regards
Jakob
________________________________
From: Martin Morgan <mtmorgan.b...@gmail.com>
Sent: 27 April 2020 10:28
To: Jakob Theorell <jakob.theor...@ndcn.ox.ac.uk>; bioc-devel@r-project.org
<bioc-devel@r-project.org>
Subject: Re: [Bioc-devel] Question about "Warning: '.local' is deprecated."
I would suggest forcing warnings to errors
options(warn=2)
and then when the now-error occurs using
traceback()
to see what is wrong -- I think this is a call to a deprecated S4 method, and
what you'd really like is the method signature.
Martin
On 4/27/20, 2:58 AM, "Bioc-devel on behalf of Jakob Theorell"
<bioc-devel-boun...@r-project.org on behalf of jakob.theor...@ndcn.ox.ac.uk>
wrote:
Dear all,
In one of my packages, flowSpecs, I have over the last weeks gotten this
warning message:
* checking examples ... WARNING
Found the following significant warnings:
Warning: '.local' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
I am trying my best to check the ?Deprecated pages, but I find them quite
uninformative, and the specific deprecation help does not take me further
either, it only says:
> .Deprecated(old = ".local")
Warning message:
'.local' is deprecated.
See help("Deprecated")
And most annoying of all: there are no .local calls in the package since
weeks back. Very thankful for any input that can straighten this out.
Best regards
Jakob Theorell, MD/PhD
Autoimmune Neurology Group
Nuffield Department of Clinical Neurosciences
University of Oxford
Phone: +447597976151
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