Dear fellow developers,

I have a package which has been failing on Travis CI's bioc-devel build since 
the release of R 4.0.0 and Bioconductor 3.11. The bioc-release build is still 
working fine.

The error happens when installing the SummarizedExperiment dependency (or, 
apparently, when installing its dependency, GenomicRanges). Here is the 
relevant part of the log:

* installing *source* package ‘SummarizedExperiment’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error: package or namespace load failed for ‘GenomicRanges’:
 .onLoad failed in loadNamespace() for 'XVector', details:
  call: NULL
  error: (converted from warning) undefined slot classes in definition of 
"XRaw": elementMetadata(class "DataTable_OR_NULL")
Error: package ‘GenomicRanges’ could not be loaded
Execution halted
ERROR: lazy loading failed for package ‘SummarizedExperiment’
* removing ‘/home/travis/R/Library/SummarizedExperiment’
* restoring previous ‘/home/travis/R/Library/SummarizedExperiment’
Error in i.p(...) :
  (converted from warning) installation of package ‘SummarizedExperiment’ had 
non-zero exit status
Calls: <Anonymous> ... with_rprofile_user -> with_envvar -> force -> force -> 
i.p
Execution halted
travis_time:end:0be4d543:start=1588839621760310466,finish=1588839851948469642,duration=230188159176,event=
The command "Rscript -e 'deps <- 
remotes::dev_package_deps(dependencies = NA);remotes::install_deps(dependencies 
= TRUE);if (!all(deps$package %in% installed.packages())) { message("missing: 
", paste(setdiff(deps$package, installed.packages()), collapse=", ")); q(status 
= 1, save = "no")}'" failed and exited with 1 during .

Your build has been stopped.

I was wondering if anyone else went through this or can offer a solution.

Best regards,
Waldir

        [[alternative HTML version deleted]]

_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel

Reply via email to