Hi Martin,
Thank you so much for your suggestions.
I fixed the errors as below and then ran the build/install/check commands and
didn't get any error.
Submitting the package, hoping by tomorrow everything should pass OK.
Regards,
Bhakti
On 6/20/20, 9:29 AM, "Martin Morgan" <mtmorgan.b...@gmail.com> wrote:
Does your vignette try to install a package? It should not.
You can delete the 'lock file with
path =
"/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-GISPA"
unlink(path, recursive = TRUE)
Martin
On 6/19/20, 2:53 PM, "Bioc-devel on behalf of Dwivedi, Bhakti"
<bioc-devel-boun...@r-project.org on behalf of bhakti.dwiv...@emory.edu> wrote:
Thank you for your response.
Quick question, I am getting the warning and below error message. any
suggestions or is there a link that I can follow to get help and fix it?
** installing vignettes
Warning in file(con, "w") :
cannot open file
'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-GISPA/00new/GISPA/doc/index.html':
No such file or directory
Error in file(con, "w") : cannot open the connection
Regards,
Bhakti
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From: Shepherd, Lori <lori.sheph...@roswellpark.org>
Sent: Friday, June 19, 2020 7:00 AM
To: Dwivedi, Bhakti <bhakti.dwiv...@emory.edu>;
bioc-devel@r-project.org <bioc-devel@r-project.org>
Subject: [External] Re: updating package on the development version
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________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of
Dwivedi, Bhakti <bhakti.dwiv...@emory.edu>
Sent: Thursday, June 18, 2020 4:24 PM
To: bioc-devel@r-project.org <bioc-devel@r-project.org>
Subject: [Bioc-devel] updating package on the development version
Hi,
I am trying to update previous release of my package (GISPA) on the
development version.
I pushed the changes and new release GISPA 1.13.1 following
https://secure-web.cisco.com/16G6QGHF8mpcsjsZBAAOMWj_a4_z0hmCZlj_TnB4TkGbw3lcmQkHHEjOqoyzLjoOMRn1aXjkTjb5avdzEYK8TvzOinzWcd9qWMiZtKViQYb59qlnna0b2zm1kpo9g5N-CAfehjdWj1aJjXXzU0Hr8DFvi9egMpJ8mJfKVtjZIxiNHpmVpAVpylYQTaAhqJ00j8m4g_-g32S9NI3JBhD0t4AqG-FOe6_XBx_MtqxawqmeCbMmzb7ACMy2fDyMtMWJN_8CFfp0MxJHYuURFn_zJFFrA_8OC5MS263jFlJ4tkGIjjP4i3l23Pk98aN0pleohwwTq6H5r4yXwIUIJZ1UtYixHkMKeMzfgh7Mx2jvPXCs/https%3A%2F%2Fbioconductor.org%2Fdevelopers%2Fhow-to%2Fgit%2Fsync-existing-repositories%2F
But, I do not see the change on the bioconductor development version
http://secure-web.cisco.com/1BfCJ7lm3FxR9215Gg0wJ4F_f-OUbGZlfSX7Ht1DBVyLt-CZZV-KC00A6xzrjCgeuhtuBWXSLpVmnjtVS2OXstGp5uPIT9ZrzhInLClCHaban0Vu4Cgjcat6pKhyv0_mkXT3BDemwUsYEc-n5Ci7Hg5ZyWVJNiFi8RXqmJZ7jivCEJbsbmPLkns3Aqlvm7sIpUsbyrHU_3sZB9ThrXyRAg1i6MYujiums1jeOJyKkH8xJ8rzlg4SZosumRATLEpNxRcqx0vJYGendXkAFaOLdducAMIKK1cFguQP3GuBIZGWXXTBajVSvf3AtXUEkgCGHMX_okMSo4UDIdulKBzh1bxvq1SjHw4IhYlMYjTUg9KI/http%3A%2F%2Fbioconductor.org%2Fpackages%2Fdevel%2Fbioc%2Fhtml%2FGISPA.html.
Where can I view the changes and make sure it passed all the checks?
Regards,
Bhakti
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