Dear bioc-devel,
multicrispr is having an error on the bioc-devel build
machines<https://bioconductor.org/checkResults/3.12/bioc-LATEST/multicrispr/malbec1-checksrc.html>,
caused by:
unable to find an inherited method for function 'bsgenomeName' for signature
'"BSgenome"
This is a bit strange, because normally a BSgenome object gets automatically
converted to a GenomeDescription object before being sent to the method
bsgenomeName. In bioc-devel, for some reason this mechanism seems to be broken.
Is it on purpose? What would be the best fix/patch?
Right now, I'm checking whether explicitation fixes things:
bsname <- GenomeInfoDb::bsgenomeName(bsgenome)
# FAILS
bsname <- GenomeInfoDb::bsgenomeName(as(bsgenome, 'GenomeDescription')) # WORKS
? (VERIFYING)
Thank you for feedback :-)
Aditya
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