Please raise an issue on the rtracklayer GitHub. Thanks, Michael
On Sun, Jul 19, 2020 at 8:20 PM Charles Plessy <charles.ple...@oist.jp> wrote: > > On 15/07/2020 10:53, Charles Plessy wrote: > > On 14/07/2020 19:56, Vincent Carey wrote: > >> Can you post an example dataset that triggers the error reproducibly? > > > > here it is: > > > > https://www.dropbox.com/s/ai9itm586clt4y9/gp.Rds?dl=0 > > > > It is a GPos object; interestingly I just realised that export.bw will > > not crash if I convert it to GRanges first... > > Dear Vincent and everybody, > > as wrapping my GPos objects in a GRanges() call suppresses the error > effectively, I wonder if I should just push a CAGEr update with that > fix, or if it is more a bug in rtracklayer or GenomicRanges ? > > Have a nice day, > > Charles > > -- > Charles Plessy - - ~ ~ ~ ~ ~ ~~~~ ~ ~ ~ ~ ~ - - charles.ple...@oist.jp > Okinawa Institute of Science and Technology Graduate University > Staff scientist in the Luscombe Unit - ~ - https://groups.oist.jp/grsu > Toots from work - ~ ~~ ~ - https://mastodon.technology/@charles_plessy > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel -- Michael Lawrence Senior Scientist, Data Science and Statistical Computing Genentech, A Member of the Roche Group Office +1 (650) 225-7760 micha...@gene.com Join Genentech on LinkedIn | Twitter | Facebook | Instagram | YouTube _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
