Hi Mikhail -- would you provide the results of sessionInfo() after the failure? Thanks
On Fri, Aug 7, 2020 at 7:08 PM Mikhail Dozmorov <mikhail.dozmo...@gmail.com> wrote: > Dear Bioconductor team, > > I am trying to update a package we developed, HiCcompare. > https://bioconductor.org/packages/HiCcompare/. The package has been > successfully submitted previously. However, now `R CMD check` throws an > error: > E> Quitting from lines 426-427 (HiCcompare-vignette.Rmd) > E> Error: processing vignette 'HiCcompare-vignette.Rmd' failed with > diagnostics: > E> non-conformable arrays > E> --- failed re-building ‘HiCcompare-vignette.Rmd’ > > Yet, If I knit the vignette manually, it builds. If I execute the code > manually, it works. If I install the package from Bioconductor, it also > works. > > I'm working with this package using bioconductor/bioconductor_docker:devel. > But the strange behavior - vignette knits manually but fails in CMD check - > persists both in Docker container and on local R installation. > > Please advise, where to troubleshoot next. > Thanks, > Mikhail > > --- > Mikhail Dozmorov, Ph.D., Blick scholar > Associate Professor, Department of Biostatistics > Affiliate, Department of Pathology > Virginia Commonwealth University > OCS #738, 830 E. Main St, RVA, 23298 > E-mail: mikhail.dozmo...@vcuhealth.org > Phone: 804-827-2055 > https://medschool.vcu.edu/expertise/detail.html?id=mdozmorov > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- The information in this e-mail is intended only for the ...{{dropped:18}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel