This should probably be posed to the support site. What version of the package are you using? Where are you seeing coordinates? I would expect those to be obtained from the TxDb package, or perhaps from AnnotationHub.
> columns(org.Dr.eg.db) [1] "ACCNUM" "ALIAS" "ENSEMBL" "ENSEMBLPROT" "ENSEMBLTRANS" [6] "ENTREZID" "ENZYME" "EVIDENCE" "EVIDENCEALL" "GENENAME" [11] "GO" "GOALL" "IPI" "ONTOLOGY" "ONTOLOGYALL" [16] "PATH" "PFAM" "PMID" "PROSITE" "REFSEQ" [21] "SYMBOL" "UNIGENE" "UNIPROT" "ZFIN" On Thu, Aug 13, 2020 at 2:13 PM Margolin, Gennady (NIH/NICHD) [C] via Bioc-devel <bioc-devel@r-project.org> wrote: > Hello, > > I have a short question – how do I figure the genome version for > org.Dr.eg.db package? I couldn’t see it in the DESCRIPTION and also it’s > not in org.Dr.eg_dbInfo() output. It would be nice to know if this is > danRer11/GRCz11 or some other assembly, as there are coordinates present in > the DB. > > Thank you, > Gennady > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- The information in this e-mail is intended only for the ...{{dropped:18}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
