At the top of each build report page, e.g.,
http://bioconductor.org/checkResults/3.12/bioc-LATEST/netDx/malbec1-buildsrc.html
there's a link with title 'following settings' describing
build-system-specific settings. Does this help to reproduce the problem?
Martin
On 9/11/20, 11:52 AM, "Bioc-devel on behalf of Shraddha Pai"
<bioc-devel-boun...@r-project.org on behalf of shraddha....@utoronto.ca> wrote:
Hello BioC-devel team,
Any idea why netDx 1.1.4 fails on the bioc devel build system?
This is the error:
--- re-building 'Predict_CaseControl_from_CNV.Rmd' using knitr
Quitting from lines 173-195 (Predict_CaseControl_from_CNV.Rmd)
Error: processing vignette 'Predict_CaseControl_from_CNV.Rmd' failed
with diagnostics:
length(url) == 1 is not TRUE
--- failed re-building 'Predict_CaseControl_from_CNV.Rmd'
I just set up the Bioc-devel docker, cloned the repo using
git clone g...@git.bioconductor.org:packages/netDx
and ran the vignette, and it runs through successfully.
However the build error occurs across all platforms so something needs to
change.
Thank you,
Shraddha
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