As I was about to hit send, I checked Slack and I found about https://github.com/Bioconductor/BiocStyle/issues/78. If you are in the same situation as me, that info will be useful =) + the info on Slack
Original email: Hi bioc-devel, Today I got a bunch of emails because most of my packages failed with errors such as: Quitting from lines 31-39 (derfinderHelper.Rmd) Error: processing vignette 'derfinderHelper.Rmd' failed with diagnostics: argument is of length zero The error basically points to the first R chunk in the Rmd files like at https://github.com/leekgroup/derfinderHelper/blob/master/vignettes/derfinderHelper.Rmd#L30-L39 for each vignette. I've noticed a similar error in the GitHub Actions logs for a package I'm actively working on (macOS and Windows using R from r-lib; Linux using bioc-devel docker still worked details at https://github.com/LieberInstitute/megadepth/runs/1152833313). Are you aware of any change to pandoc or markdown that might be related to this issue? I don't see anything at rstudio/rmarkdown https://github.com/rstudio/rmarkdown/issues?q=argument+is+of+length+zero. Best, Leo Leonardo Collado Torres, Ph. D. Investigator LIEBER INSTITUTE for BRAIN DEVELOPMENT 855 N. Wolfe St., Suite 300 Baltimore, MD 21205 lcolladotor.github.io lcollado...@gmail.com _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
