Dear Bioc team, my package has started to fail during the build check ( http://bioconductor.org/checkResults/devel/bioc-LATEST/ramr/). I tried to figure out why and it appears that I somehow make GRanges object non-subsettable. Could anyone from "GenomicRanges" developers look at my issue and advise me on a solution, please?
To reproduce: library(ramr) data(ramr) amrs <- getAMR(ramr.data, ramr.samples, ramr.method="beta", min.cpgs=5, merge.window=1000, qval.cutoff=1e-3, cores=2) # this works: class(amrs) amrs # error: amrs[2] # suddenly works again: GRangesList(amrs)[[1]][2] Best regards, Oleksii [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel