This has been fixed in R, and should go away once the binaries have caught up. See
https://bugs.r-project.org/bugzilla/show_bug.cgi?id=18090 Best, Deepayan On Sat, May 1, 2021, 4:44 PM Benjamin Jean-Marie Tremblay < benjamin.tremb...@uwaterloo.ca> wrote: > Dear Bioc-devel, > > For a little while now I've been getting a couple of odd Rd warnings in > the Windows check of the devel branch of my package: > > Found the following significant warnings: > Rd warning: Previous alias or file overwritten by alias: > convert_motifs,PWM-method > Rd warning: cannot open file > 'D:/biocbuild/bbs-3.13-bioc/meat/universalmotif.buildbin-libdir/00LOCK-universalmotif/00new/universalmotif/help/[<-,universalmotif-method.html': > Invalid argument > See 'D:/biocbuild/bbs-3.13-bioc/meat/universalmotif.Rcheck/00install.out' > for details. > > These warnings do not appear in the release branch Windows check, so I am > a bit confused as to what may be happening. My guess is that the first > warning is happening due to the presence of another alias > (convert_motifs,pwm-method) which might pose a problem if the Rd aliases or > filenames were case insensitive. The second warning I suspect is relating > to some of the characters in '<-' not playing nice with Rd aliases or > filenames, but again I find it strange that this has suddenly become a > problem. I have noticed that I'm not alone in getting these warnings > though, for example I can see that IRanges, BiocGenerics, etc are getting > them too. > > Any insight would be helpful. The deadline for passing R CMD check is in a > couple of weeks, and I am a loss as to what to do. The fact that core > Bioconductor packages are getting similar warnings suggests to me that > these might be considered 'acceptable warnings' as mentioned in the release > schedule, but I wanted to ask ahead of time to be sure. > > Thanks, > > Benjamin > > > https://bioconductor.org/checkResults/devel/bioc-LATEST/universalmotif/riesling1-checksrc.html > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel