BiocCheck is broken. The check for vignette sources doesn’t find destiny’s .ipynb files. Please fix!
https://github.com/Bioconductor/BiocCheck/blob/554a92e5de4d738937cf7c06bc240f317c728753/R/util.R#L527-L532 Am So., 12. Dez. 2021 um 12:49 Uhr schrieb Philipp A. <flying-sh...@web.de>: > I’ve been on holidays! Now that I’m back I found that I can finally commit > again. > > I think the easiest fix was to just switch to HTML vignettes, then destiny > is no longer dependent on Bioconductor’s LaTeX environment staying stable. > Let’s see in the next build if it worked. > > If not, I’d like some support. The 24 hour turnaround of the build bots is > too slow for incremental changes. > > Am Fr., 10. Dez. 2021 um 18:59 Uhr schrieb Vincent Carey < > st...@channing.harvard.edu>: > >> How are we doing with this? Can destiny be maintained? Do we need more >> git assistance? >> I am told the package is not passing check in 3.14. >> >> On Thu, Nov 18, 2021 at 4:24 AM Philipp A. <flying-sh...@web.de> wrote: >> >>> My addresses are phil.ange...@gmail.com (not philipp) and >>> flying-sh...@web.de. >>> >>> I’ll add a key as soon as I’m able to log in. >>> >>> Am Mo., 15. Nov. 2021 um 15:56 Uhr schrieb Nitesh Turaga < >>> nturaga.b...@gmail.com>: >>> >>> > You have to activate the account at >>> > https://git.bioconductor.org/BiocCredentials/account_activation. Set a >>> > password and add Ssh keys. >>> > >>> > Once again, the email you are trying to activate is ' >>> > philipp.ange...@gmail.com’. >>> > >>> > The problem seems to be non-matching key pairs. Add new SSH keys. >>> > >>> > Best, >>> > >>> > Nitesh >>> > >>> > >>> > Nitesh Turaga >>> > Scientist II, Department of Data Science, >>> > Bioconductor Core Team Member >>> > Dana Farber Cancer Institute >>> > >>> > > On Nov 15, 2021, at 9:54 AM, Nitesh Turaga <nturaga.b...@gmail.com> >>> > wrote: >>> > > >>> > > Hi Philipp, >>> > > >>> > > The email address that is registered to BiocCredentials right now is >>> ' >>> > philipp.ange...@gmail.com'. It doesn’t look like an institutional >>> email >>> > address. >>> > > >>> > > Could you please confirm the email change to flying-sh...@web.de ?? >>> > > >>> > > Best, >>> > > >>> > > Nitesh >>> > > >>> > > Nitesh Turaga >>> > > Scientist II, Department of Data Science, >>> > > Bioconductor Core Team Member >>> > > Dana Farber Cancer Institute >>> > > >>> > >> On Nov 15, 2021, at 2:36 AM, Carsten Marr < >>> > carsten.m...@helmholtz-muenchen.de> wrote: >>> > >> >>> > >> confirmed! >>> > >> >>> > >> >>> > >> best, >>> > >> c >>> > >> >>> > >> >>> > >> >>> > >>> Am 13.11.2021 um 15:56 schrieb Philipp A. <flying-sh...@web.de>: >>> > >>> >>> > >>> I no longer have control of this email address. >>> > >>> >>> > >>> Please add the one I’m writing from to the account. >>> > >>> >>> > >>> My supervisor (CC) from when I was at the institution can confirm >>> that >>> > I’m the same person. >>> > >>> >>> > >>> Best, Phil >>> > >>> >>> > >>> Am Di., 9. Nov. 2021 um 16:24 Uhr schrieb Nitesh Turaga < >>> > nturaga.b...@gmail.com>: >>> > >>> Dear Phil, >>> > >>> >>> > >>> Please activate your account at >>> > https://git.bioconductor.org/BiocCredentials/account_activation. Add >>> new >>> > SSH keys, because it’s possible you are not using the correct >>> key-pairs. >>> > >>> >>> > >>> Nothing on our end seems out of place. >>> > >>> >>> > >>> The FAQ section from #13 onwards has other debugging options as >>> well, >>> > https://bioconductor.org/developers/how-to/git/faq/. >>> > >>> >>> > >>> Best, >>> > >>> >>> > >>> Nitesh >>> > >>> >>> > >>> >>> > >>> Nitesh Turaga >>> > >>> Scientist II, Department of Data Science, >>> > >>> Bioconductor Core Team Member >>> > >>> Dana Farber Cancer Institute >>> > >>> >>> > >>>> On Nov 8, 2021, at 12:23 PM, Philipp A. <flying-sh...@web.de> >>> wrote: >>> > >>>> >>> > >>>> Hi, >>> > >>>> >>> > >>>> My package (destiny) has been deprecated because Bioconductor’s >>> LaTeX >>> > >>>> environment keeps changing and breaking my docs. >>> > >>>> >>> > >>>> I‘m trying to fix it once again, but I get: >>> > >>>> >>> > >>>> $ git push upstream masterFATAL: W any packages/destiny p.angerer >>> > >>>> DENIED by fallthru >>> > >>>> >>> > >>>> *Please note that this isn’t covered in the FAQ*: >>> > >>>> >>> > >>>> “p.angerer” indicates that it recognizes me, but still doesn’t >>> allow >>> > me to >>> > >>>> push commits. >>> > >>>> >>> > >>>> Best, Phil >>> > >>>> >>> > >>>> [[alternative HTML version deleted]] >>> > >>>> >>> > >>>> _______________________________________________ >>> > >>>> Bioc-devel@r-project.org mailing list >>> > >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>> > >>> >>> > >> >>> > >> ------------------------------------------- >>> > >> Carsten Marr >>> > >> +49 89 3187 2158 >>> > >> AIH Institute of AI for Health >>> > >> Helmholtz Zentrum München >>> > >> www.helmholtz-muenchen.de/aih/index.html >>> > >> >>> > >> >>> > >> >>> > >> >>> > >> >>> > >> >>> > >> >>> > >> >>> > >> >>> > >> >>> > >> Helmholtz Zentrum München >>> > >> Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH) >>> > >> Ingolstädter Landstr. 1 >>> > >> 85764 Neuherberg >>> > >> www.helmholtz-muenchen.de >>> > >> Aufsichtsratsvorsitzende: MinDir.in Prof. Dr. Veronika von Messling >>> > >> Geschäftsführung: Prof. Dr. med. Dr. h.c. Matthias Tschöp, Kerstin >>> > Günther >>> > >> Registergericht: Amtsgericht München HRB 6466 >>> > >> USt-IdNr: DE 129521671 >>> > >> >>> > > >>> > >>> > >>> >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> Bioc-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>> >> >> The information in this e-mail is intended only for t...{{dropped:18}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
