Hi everyone, I have a related question that could be relevant to the original poster.
Concrete example; the Bioconductor satuRn package http://bioconductor.org/packages/release/bioc/html/satuRn.html that I am maintaining. It was first released in RELEASE_3_13, so that was version 1.1.0 both on my Git and Bioconductor. For RELEASE_3_14, I did not actively follow up the package, resulting in a current package version of 1.1.0 on git, 1.2.0 on bioc 3.14 and 1.3.0 on bioc devel. I now want to update the package. Does this mean I have to jump from version 1.1.0 on my git to 1.3.1 in my git (and bioc devel) to propagate these changes to bioc devel? Kind regards, Jeroen Gilis ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Marcel Ramos <marcel.ramospe...@roswellpark.org> Sent: Monday, December 20, 2021 8:02 PM To: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] EXTERNAL: R: release of new version of package Hi Emanuela, You should not be pushing new features to the RELEASE_3_14 branch. This is meant to be stable throughout the course of the release cycle. Make sure you are pushing your new commits to the devel branch of Bioconductor with: git push upstream master Based on your git history, it looks like you were able to make changes. Do not forget to bump the Z version of your package, e.g., 1.5.1 in devel so that the new version of the package propagates. This can take between 24 - 48 hours. Best regards, Marcel On 12/20/21 1:43 PM, Emanuela Iovino wrote: > Dear Nitesh > thank you for your answer. > I followed Bioconductor instruction but when I pushed on > > upstream/RELEASE_3_14 I received always Everything up-to-date. > > Before to follow Bioconductor instruction I already had pushed all my > modification on my Github repository and I don't know if it got me a problem > in next steps. > > I checked the last commit > onhttps://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fbioconductor.org%2FcheckResults%2Frelease%2Fbioc-LATEST%2FuncoverappLib%2F&data=04%7C01%7Cjeroen.gilis%40ugent.be%7C271fc28226574a4ba0d708d9c3eb6540%7Cd7811cdeecef496c8f91a1786241b99c%7C1%7C0%7C637756238053093335%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=pWDS9dMrj03KscaX%2FXvEmzt9IfZFjcS0bsTTlYDhgYs%3D&reserved=0 > and it doesn't match with my last modification. > > Have I to repeat all steps? > > Thanks > > Emanuela > > > > ________________________________ > Da: Nitesh Turaga<nturaga.b...@gmail.com> > Inviato: luned� 20 dicembre 2021 15:36 > A: Emanuela Iovino<emanuela.iov...@unibo.it> > Cc:bioc-devel@r-project.org <bioc-devel@r-project.org> > Oggetto: Re: [Bioc-devel] release of new version of package > > Hi, > > You�ll want these two tutorials since I�m guessing you have a Github Repo and > along with the git.bioconductor repo. > > So you�ll first have to sync (1), then push your updates to both Github and > Bioc server(2) > > (1)https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fbioconductor.org%2Fdevelopers%2Fhow-to%2Fgit%2Fsync-existing-repositories%2F&data=04%7C01%7Cjeroen.gilis%40ugent.be%7C271fc28226574a4ba0d708d9c3eb6540%7Cd7811cdeecef496c8f91a1786241b99c%7C1%7C0%7C637756238053093335%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=rvYzIfbIe%2FBe9SZ7ZN1s6%2BRBK7yYU90bWX1ONiZE4K0%3D&reserved=0 > > (2)https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbioconductor.org%2Fdevelopers%2Fhow-to%2Fgit%2Fpush-to-github-bioc%2F&data=04%7C01%7Cjeroen.gilis%40ugent.be%7C271fc28226574a4ba0d708d9c3eb6540%7Cd7811cdeecef496c8f91a1786241b99c%7C1%7C0%7C637756238053093335%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=6b1EA%2Bo0eUCUGzkLlMgfuhlm3q3vrN4qmSbmqCyNxHg%3D&reserved=0 > > Best > > Nitesh Turaga > Scientist II, Department of Data Science, > Bioconductor Core Team Member > Dana Farber Cancer Institute > >> On Dec 20, 2021, at 9:32 AM, Emanuela Iovino<emanuela.iov...@unibo.it> >> wrote: >> >> Hello everyone >> I'm the developer and the maintainer of Bioconductor package uncoverappLib . >> I recently added some features to package and I would like to know how >> update to Biocondunctor . Do I follow new package workflow ? >> (https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbioconductor.org%2Fdevelopers%2Fhow-to%2Fgit%2Fnew-package-workflow%2F&data=04%7C01%7Cjeroen.gilis%40ugent.be%7C271fc28226574a4ba0d708d9c3eb6540%7Cd7811cdeecef496c8f91a1786241b99c%7C1%7C0%7C637756238053093335%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=j2z7cyT6guPZBiTRFFsUO7I6S0T2JMNLSsP69EYsrIw%3D&reserved=0). >> Many thanks in advance >> >> Emanuela Iovino >> PhD Student in Data Science and Computation >> Division of Medical Genetics >> Dept. Medical and Surgical Sciences - DIMEC >> University of Bologna >> Pol.S.Orsola-Malpighi, via Massarenti 9, >> >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel&data=04%7C01%7Cjeroen.gilis%40ugent.be%7C271fc28226574a4ba0d708d9c3eb6540%7Cd7811cdeecef496c8f91a1786241b99c%7C1%7C0%7C637756238053093335%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=NGTowiVRTd2As0%2BR1cdNrGiIP3KVg40NJY%2BTXX29Rhs%3D&reserved=0 > > [[alternative HTML version deleted]] > > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel&data=04%7C01%7Cjeroen.gilis%40ugent.be%7C271fc28226574a4ba0d708d9c3eb6540%7Cd7811cdeecef496c8f91a1786241b99c%7C1%7C0%7C637756238053093335%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=NGTowiVRTd2As0%2BR1cdNrGiIP3KVg40NJY%2BTXX29Rhs%3D&reserved=0 --- Marcel Ramos Bioconductor Core Team Roswell Park Comprehensive Cancer Center Dept. of Biostatistics & Bioinformatics Elm St. & Carlton St. Buffalo, New York 14263 This email message may contain legally privileged and/or...{{dropped:4}} _______________________________________________ Bioc-devel@r-project.org mailing list https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel&data=04%7C01%7Cjeroen.gilis%40ugent.be%7C271fc28226574a4ba0d708d9c3eb6540%7Cd7811cdeecef496c8f91a1786241b99c%7C1%7C0%7C637756238053093335%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=NGTowiVRTd2As0%2BR1cdNrGiIP3KVg40NJY%2BTXX29Rhs%3D&reserved=0 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
