Hi Jiping,
The log on
https://bioconductor.org/checkResults/devel/bioc-LATEST/NuPoP/palomino4-checksrc.html
shows the error is from examples in "NuPoP-Ex.R". You called "
base::assign(".ptime", proc.time(), pos = "CheckExEnv")" in this file. If you
check the doc for function "proc.time()". There is a statement " Times of child
processes are not available on Windows and will always be given as NA."
I guess this is the source of the error.
Best,
Shuyu
On 09/08/2022, 00:41, "Bioc-devel on behalf of Hervé Pagès"
<bioc-devel-boun...@r-project.org on behalf of hpages.on.git...@gmail.com>
wrote:
Hi jiping,
I suspect R dies during the call to predNuPoP(). Could this be related
to the recent changes you made to the master branch of the package, in
particular to changes to the Fortran code? Note that the Fortran
compiler of the Mac builder emits a warning about the size of the
'trann4' array being unsafe:
https://bioconductor.org/checkResults/3.16/bioc-LATEST/NuPoP/lconway-install.html
We don't see this warning on the Mac builder in release so may it's an
issue that got introduced recently?
https://bioconductor.org/checkResults/3.15/bioc-LATEST/NuPoP/merida1-install.html
On a different note, could you please remove the files in the
NuPoP/inst/doc/ folder? These files don't belong to git (they get
automatically generated and added to the package source tarball by 'R
CMD build').
Thanks,
H.
On 08/08/2022 07:24, Jiping Wang wrote:
> Hi,
>
> Could anyone give some hints on the check errors of my package for
windows system? It seems everything was fine for linux and macs. Please see
checkResults page below. Thanks.
>
> Best,
> jiping
>
>
https://bioconductor.org/checkResults/devel/bioc-LATEST/NuPoP/palomino4-checksrc.html
>
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
--
Hervé Pagès
Bioconductor Core Team
hpages.on.git...@gmail.com
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