I can reproduce this locally using the most recent R and packages. It could be a dependency of your package changed or a change in base R itself. Please investigate and make sure you are using the latest version of R and all the latest versions of Bioconductor/R packages. BiocManager::install / BiocManager::valid can assist in making sure all dependent packages are up-to-date.
Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Garrett Jenkinson <gargar...@gmail.com> Sent: Tuesday, November 29, 2022 7:45 AM To: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: [Bioc-devel] Builds suddenly failing I recently (over past couple weeks) started receiving notices like the one below, despite not having pushed any changes to my package for quite some time (and all builds passing previously). Was there a change to the build system or requirements that could be causing this? Thank you, Garrett > On Nov 28, 2022, at 11:00 AM, bbs-nore...@bioconductor.org wrote: > > [This is an automatically generated email. Please don't reply.] > > Hi borealis maintainer, > > According to the Multiple platform build/check report for BioC 3.16, > the borealis package has the following problem(s): > > o ERROR for 'R CMD build' on nebbiolo2. See the details here: > > https://secure-web.cisco.com/1yYO2YUe1UiuNkFx0y64nsi6WQNfgKzqbJOCD-Fyq9tB_EQ2UIKmRoVx3OJB_9XnqK4BaciWccM7ppHEsACYoovKith-vZ8LQ3ZxIk6ytI-zRwqQzi5SBOU8TN9MivO3ffF0Lf2EGRixdhx_m9HdpqtXeCxei1t-THmtCztDyJb71d9o3WBJN9LIvWhygfiSouoWWKymcKae4Ea8AuCsD0VDhe_g8Od5_XDLkzIdQMmiCkdx4hnXuQeN0J1m4MB5L8wF1rX5NBs4U67NQVa8i2wT2qNomo1JZWdmpFbDTZtrA5VrT2aAlZJr0DmYzOLqD/https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.16%2Fbioc-LATEST%2Fborealis%2Fnebbiolo2-buildsrc.html > > Please take the time to address this by committing and pushing > changes to your package at git.bioconductor.org > > Notes: > > * This was the status of your package at the time this email was sent to you. > Given that the online report is updated daily (in normal conditions) you > could see something different when you visit the URL(s) above, especially > if > you do so several days after you received this email. > > * It is possible that the problems reported in this report are false > positives, > either because another package (from CRAN or Bioconductor) breaks your > package (if yours depends on it) or because of a Build System problem. > If this is the case, then you can ignore this email. > > * Please check the report again 24h after you've committed your changes to > the > package and make sure that all the problems have gone. > > * If you have questions about this report or need help with the > maintenance of your package, please use the Bioc-devel mailing list: > > > https://secure-web.cisco.com/1ZnkeN4Bfuhvu5fUtz5DlrFpIA2ciPrPY7zSyYhJaT5h3tPFLbExjeQJRJi3OT2pZb78IFlecW1BGiemtUWeB2KzvD1f67N5yS-66nSEHFB0rMFtB_gTlGNc2sRwlxqs_bopCm9XSCiXUxJkPIl0JLtaZzUpYiuU2KWTxr_Py7dj7KxlTM6OjFAiw1vt8dvt-MVMYSpFzlUKaUWngPW_eu1238KQhScmg-XirsCWpGnnl0d7zxMHYVKjd6fpaiA2UjxLYyruUxNLL9-tUUc23f1c6FoagLHmwoRtvhwmFlidsssv2ym3oTyjUI9ylKBkG/https%3A%2F%2Fbioconductor.org%2Fhelp%2Fmailing-list%2F > > (all package maintainers are requested to subscribe to this list) > > For immediate notification of package build status, please > subscribe to your package's RSS feed. Information is at: > > https://secure-web.cisco.com/1Fb-DxurFeFFKXfdhCwe_aHhRNecgBZPGJAy4Yjjgxe00eCNnOuo8564REQO4x1zDqCn-qwzNVdHhRt2G_rriLREKrzk7OA_SKSOxp9DTz1qFpPcvosXAz_rqCLtexPhl9JKsTDQGInBXSag8bXY6Jf4JIq3gJ68h8Oy60ychStonfauULvBEQiXvKbTwNRk7RCorhfPBDEF7mTU23oYwyGy38htVDJwVS66J6o7KHm0DF7BHZwi1J5qXvmoUOm1PRyaQyPFLv26nTjOOyc1DwHEGP3iEc8x0bhoZyTn_weXQw-sb0C9FBAcgco22SLe-/https%3A%2F%2Fbioconductor.org%2Fdevelopers%2Frss-feeds%2F > > Thanks for contributing to the Bioconductor project! > _______________________________________________ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1t1xLCGieDtTnlbd2aA995uaKO0xS4jC6Bg-VoYVLIhlZPZHjgs0sQ54cpIvoHThNfeERvp6NI586P27ngK_JR7ASRH5YESPDQA5Pk0uujaEpq3X2nZl2y0fbZE6G03F-hqq61CyJniNjnng-pLlH2eoxxXWhUftikI3AQLagzUt5IN1A8RB_SMrh_atYp14Ayxns5J8tqBJn_ZJJmtgfPHUTwB3tmNyZrMScGBAWjXqcq7S6KOrg3UIALmGsC6YRVKSUbZCih4w3JFJxH9Ly9PAFPj_qnWQGgHFuEi7DdArdLJd01d7vg8Hurm1nW6hx/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
