Dear all, How can I make Pau Badia i Mompel (cc'd) the maintainer of DoRothEA <https://bioconductor.org/packages/release/data/experiment/html/dorothea.html>? He's already registered in BioC and is a maintainer of another package (decoupleR).
Thanks in advance! Best, Daniel On 21.02.23 07:58, Martin Grigorov wrote: > Hi Ulrich, > > Your problem looks like another problem of which the Bioc core team is > aware but yours looks a bit different so it might be something new. > > Last Friday another developer shared > <https://community-bioc.slack.com/archives/C6MVC96AZ/p1676638521702469> > this in the Slack #bioc_git channel: > > OSCA.basic % git push upstream RELEASE_3_16 > Enumerating objects: 13, done. > Counting objects: 100% (13/13), done. > Delta compression using up to 4 threads > Compressing objects: 100% (8/8), done. > Writing objects: 100% (8/8), 829 bytes | 165.00 KiB/s, done. > Total 8 (delta 5), reused 0 (delta 0) > remote: Traceback (most recent call last): > remote: File "hooks/pre-receive.h00-pre-receive-hook-dataexp-workflow", > line 89, in <module> > remote: apply_hooks(hooks_dict) > remote: File "hooks/pre-receive.h00-pre-receive-hook-dataexp-workflow", > line 71, in apply_hooks > remote: if hooks_dict["pre-receive-hook-merge-markers"]: # enable hook > remote: KeyError: 'pre-receive-hook-merge-markers' > To git.bioconductor.org:packages/OSCA.basic > ! [remote rejected] RELEASE_3_16 -> RELEASE_3_16 (pre-receive hook declined) > error: failed to push some refs to > 'g...@git.bioconductor.org:packages/OSCA.basic' > > > and here is the answer of Lori Shepherd: > > Lori Shepherd 2:21 PM > <https://community-bioc.slack.com/archives/C6MVC96AZ/p1676636473133529> > sorry thats on me most likely -- I updated the hooks yesterday . I'll > investigate (edited) > I found the issue and am actively working on the remedy. This should not > affect software packages but data experiment, workflows, and books are > affected. I hope to have it remedied shortly. > > On Mon, Feb 20, 2023 at 5:33 PM Ulrich Bodenhofer<bodenho...@bioinf.jku.at> > wrote: > >> Hi, >> >> I am the maintainer of the 'msa' package which has been in Bioconductor >> for eight years now. The package is hosted on github and synchronized with >> the BioC git repo. Today I merged a pull request that had been contributed >> by a github user. I further updated the package's DESCRIPTION and inst/NEWS >> file and wanted to push the latest version to the BioC git repo. No matter >> what I did, I did not succeed. The error messages are attached below. I am >> not a very skilled git user. Does anybody have an idea what I could/should >> do? Any help is gratefully appreciated! >> >> Thanks, >> Ulrich >> >> -- >> >> Enumerating objects: 22, done. >> Counting objects: 100% (22/22), done. >> Delta compression using up to 8 threads >> Compressing objects: 100% (13/13), done. >> Writing objects: 100% (13/13), 19.57 KiB | 1.96 MiB/s, done. >> Total 13 (delta 9), reused 0 (delta 0), pack-reused 0 >> remote: Traceback (most recent call last): >> remote: File "hooks/pre-receive.h00-pre-receive-hook-software", line 93, >> in <module> >> remote: apply_hooks(hooks_dict) >> remote: File "hooks/pre-receive.h00-pre-receive-hook-software", line 79, >> in apply_hooks >> remote: prevent_duplicate_commits(oldrev, newrev, refname) >> remote: File >> "/home/git/.gitolite/local/hooks/repo-specific/prevent_duplicate_commits.py", >> line 67, in prevent_duplicate_commits >> remote: rev2 = get_svn_revision(second) >> remote: File >> "/home/git/.gitolite/local/hooks/repo-specific/prevent_duplicate_commits.py", >> line 43, in get_svn_revision >> remote: revision = SVN_COMMIT_REGEX.match(body.decode()) >> remote: UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa1 in >> position 25709: invalid start byte >> To git.bioconductor.org:packages/msa.git >> ! [remote rejected] master -> master (pre-receive hook declined) >> error: failed to push some refs to 'git.bioconductor.org:packages/msa.git' >> >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
