Both release and devel show the same error. I'm able to reproduce the error when attempting R CMD INSTALL YAPSA in the Bioconductor docker container (https://www.bioconductor.org/help/docker/). I recommend using it to troubleshoot this error.
Jennifer Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Zuguang Gu <joker...@gmail.com> Sent: Saturday, September 16, 2023 12:41 AM To: bioc-devel <bioc-devel@r-project.org> Subject: [Bioc-devel] YAPSA failed on the release branch * This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. * Hi Bioc, The YAPSA package failed on the release branch: ** installing vignettes Warning in file(con, "w") : cannot open file 'F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-YAPSA/00new/YAPSA/doc/index.html': No such file or directory Error in file(con, "w") : cannot open the connection ERROR: installing vignettes failed * removing 'F:/biocbuild/bbs-3.17-bioc/R/library/YAPSA' https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fbioconductor.org%2FcheckResults%2Frelease%2Fbioc-LATEST%2FYAPSA%2Fpalomino3-install.html__%3B!!PxiZbSOawA!ICPPZ7IJXfgBIf1HVv6WEokN6qSCFn0uR0CJ8iWnUfWl4TTfsQK7EEGjYbN0eLz8miT0QLn_nzkHk0Q5PkbTwKerhzw%24&data=05%7C01%7Cjennifer.wokaty%40sph.cuny.edu%7Ca888324fa64c4d7a4fbd08dbb66f56eb%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638304361561054701%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=BWUf3mhca%2BdwmIDW%2B7GX7Sx5otycrPcGbZhhkOmP9oc%3D&reserved=0<https://urldefense.com/v3/__https://bioconductor.org/checkResults/release/bioc-LATEST/YAPSA/palomino3-install.html__;!!PxiZbSOawA!ICPPZ7IJXfgBIf1HVv6WEokN6qSCFn0uR0CJ8iWnUfWl4TTfsQK7EEGjYbN0eLz8miT0QLn_nzkHk0Q5PkbTwKerhzw$> According to the error message, I cannot see how the error occurred. YAPSA passed all the tests on my local machine and also on CRAN win-builder. I guess it might due to the configurations on the building server side? YAPSA passed all tests on devel and the two versions are basically identical. Thanks! Zuguang [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel__%3B!!PxiZbSOawA!ICPPZ7IJXfgBIf1HVv6WEokN6qSCFn0uR0CJ8iWnUfWl4TTfsQK7EEGjYbN0eLz8miT0QLn_nzkHk0Q5PkbTSA5OCDw%24&data=05%7C01%7Cjennifer.wokaty%40sph.cuny.edu%7Ca888324fa64c4d7a4fbd08dbb66f56eb%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638304361561054701%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=C7gWNIpY9CM3j2haVK6d01c2j1UjAEfuf6kbNSVygFk%3D&reserved=0<https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/bioc-devel__;!!PxiZbSOawA!ICPPZ7IJXfgBIf1HVv6WEokN6qSCFn0uR0CJ8iWnUfWl4TTfsQK7EEGjYbN0eLz8miT0QLn_nzkHk0Q5PkbTSA5OCDw$> [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
