Thank you for the fix. I have updated the package. Best,
Marcel On 9/21/23 7:12 PM, Ali Sajid Imami wrote: I'll take a look. I rely on KEGGREST a lot. Regards, Dr. Ali Sajid Imami LinkedIn <https://pk.linkedin.com/pub/ali-sajid-imami/50/956/2a6><https://pk.linkedin.com/pub/ali-sajid-imami/50/956/2a6> On Thu, Sep 21, 2023 at 7:02 PM Charles Plessy <charles.ple...@oist.jp><mailto:charles.ple...@oist.jp> wrote: Dear all, yesterday I reported on GitHub that the regression tests of KEGGREST fail because the KEGGREST:::.get.tmp.url function can not parse www.kegg.jp<http://www.kegg.jp> pages anymore. https://github.com/Bioconductor/KEGGREST/issues/21 This is a problem in Debian because 1) we do not allow the Bioconductor packages that we redistribute to fail their tests and 2) the reverse-dependency chain of KEGGREST is heavy. KEGGREST <- AnnotationDbi <- GenomicFeatures <- lots of other packages I am not familiar with KEGG enough to grasp what KEGGREST:::.get.tmp.url was looking for. But I was wondering if this bug would be a low-hanging fruit for somebody else in this list? Have a nice day, Charles Plessy -- Charles Plessy - - ~ ~ ~ ~ ~ ~~~~ ~ ~ ~ ~ ~ - - charles.ple...@oist.jp<mailto:charles.ple...@oist.jp> Okinawa Institute of Science and Technology Graduate University Senior staff scientist ~~ Luscombe Unit ~~ https://groups.oist.jp/grsu Toots from work - ~~ ~~~~ ~~ - https://fediscience.org/@charles_plessy _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel --- Marcel Ramos Bioconductor Core Team Roswell Park Comprehensive Cancer Center Dept. of Biostatistics & Bioinformatics Elm St. & Carlton St. Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
