Hi, I've got a build error on kunpeng2 which has me a bit stuck, with the build report available here: https://bioconductor.org/checkResults/3.18/bioc-LATEST/extraChIPs/kunpeng2-checksrc.html I'm struggling to understand where it's coming from as it doesn't seem related to the package itself. I think the key section is this one:
* checking examples ... ERROR Running examples in ‘extraChIPs-Ex.R’ failed The error occurred in: R version 4.3.1 (2023-06-16) -- "Beagle Scouts" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > pkgname <- "extraChIPs" > source(file.path(R.home("share"), "R", "examples-header.R")) > options(warn = 1) > base::assign(".ExTimings", "extraChIPs-Ex.timings", pos = 'CheckExEnv') > base::cat("name\tuser\tsystem\telapsed\n", file=base::get(".ExTimings", pos = 'CheckExEnv')) > base::assign(".format_ptime", + function(x) { + if(!is.na(x[4L])) x[1L] <- x[1L] + x[4L] + if(!is.na(x[5L])) x[2L] <- x[2L] + x[5L] + options(OutDec = '.') + format(x[1L:3L], digits = 7L) + }, + pos = 'CheckExEnv') > > ### * </HEADER> I also tried setting up the docker locally using the instructions here: https://blog.bioconductor.org/posts/2023-06-09-debug-linux-arm64-on-docker/. After adding a step to install all of my package dependencies, I can't reproduce the error on my local ARM64 image. However, I do get the following, quite different error: * checking PDF version of manual without index ... ERROR Re-running with no redirection of stdout/stderr. Hmm ... looks like a package Converting parsed Rd's to LaTeX .... Creating pdf output from LaTeX ... Warning in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : texi2dvi script/program not available, using emulation Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : pdflatex is not available Warning in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : texi2dvi script/program not available, using emulation Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : pdflatex is not available Error in running tools::texi2pdf() Is anyone able to shed some insights as to what may be up? The key part of the kunpeng2 error doesn't resemble any of my code, and I'm guessing the docker image doesn't have pdflatex. Maybe? Thanks in advance, Stevie [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel