Ran, I don't see the error that you mention. The current error on the build report is that cfTools is missing cfToolsData, which I understand is a recently accepted experiment package. It should probably become available on Tuesday so I may see the error on the build report on Wednesday. When I look at cfTools, I see that you're managing tensorflow with basilisk, which is the right way to go about it. I've removed the cache for cfTools in basilisk on palomino4 , but this may not be helpful until we have cfToolsData next week. If we continue to see the problem, I can try removing the cache again and troubleshoot more.
Martin, Regarding your question about updating tensorflow that is made available on the build machines for CRAN package tensorflow<https://cran.r-project.org/web/packages/tensorflow/index.html>, it should be fine to update tensorflow on kunpeng2. Jennifer Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Martin Grigorov <martin.grigo...@gmail.com> Sent: Tuesday, October 10, 2023 3:14 PM To: RAN HU <hu...@ucla.edu> Cc: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] cfTools build error * This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. * Hi, https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fpypi.org%2Fproject%2Ftensorflow%2F2.10.0%2F*files__%3BIw!!PxiZbSOawA!PCH5e74i_iyFpJzRK4TpZKocPg4CQic6KN2P-81NJnswcL3UZlJgQ_LNH2b1xHbOyfz-oBh9_4nlay119oA0O1_yiPai9gBrNQcC%24&data=05%7C01%7Cjennifer.wokaty%40sph.cuny.edu%7Cb5487ea55dcd49d6879208dbc9c5303c%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638325620989566974%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=ueZgqhgyQOW8oziReHZyw%2By4VSB05n6Ko5RVi5cmeQs%3D&reserved=0<https://urldefense.com/v3/__https://pypi.org/project/tensorflow/2.10.0/*files__;Iw!!PxiZbSOawA!PCH5e74i_iyFpJzRK4TpZKocPg4CQic6KN2P-81NJnswcL3UZlJgQ_LNH2b1xHbOyfz-oBh9_4nlay119oA0O1_yiPai9gBrNQcC$> is the first release that provides a wheel for Linux ARM64 (aarch64). Would it be OK to update from 2.8.0 to 2.10.0 ? Or even better to 2.14.0 (latest and greatest)! Regards, Martin On Tue, Oct 10, 2023 at 9:30 PM RAN HU <hu...@ucla.edu> wrote: > Dear Bioc Team, > > I have a build error on palomino4 and kunpeng2 due to an environment > problem: Multiple platform build/check report for BioC 3.18 - All results > for package cfTools (bioconductor.org) > <https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2FcfTools%2F__%3B!!PxiZbSOawA!PCH5e74i_iyFpJzRK4TpZKocPg4CQic6KN2P-81NJnswcL3UZlJgQ_LNH2b1xHbOyfz-oBh9_4nlay119oA0O1_yiPai9myA1xWz%24&data=05%7C01%7Cjennifer.wokaty%40sph.cuny.edu%7Cb5487ea55dcd49d6879208dbc9c5303c%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638325620989566974%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=l7ojno1fBG3mpn7ubSm6y5gcDwfEOhL6QRROUDeG3Fo%3D&reserved=0 > > > PackagesNotFoundError: The following packages are not available from > current channels: > - tensorflow=2.8.0 > > Could you help me solve this? Thank you in advance! > > Best, > > Ran > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel__%3B!!PxiZbSOawA!PCH5e74i_iyFpJzRK4TpZKocPg4CQic6KN2P-81NJnswcL3UZlJgQ_LNH2b1xHbOyfz-oBh9_4nlay119oA0O1_yiPai9i1oP1gO%24&data=05%7C01%7Cjennifer.wokaty%40sph.cuny.edu%7Cb5487ea55dcd49d6879208dbc9c5303c%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638325620989566974%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=pW2Tmh5ffm0nU%2B3GsIaGdlyOPse%2FZzpcOUHrwFRK52I%3D&reserved=0<https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/bioc-devel__;!!PxiZbSOawA!PCH5e74i_iyFpJzRK4TpZKocPg4CQic6KN2P-81NJnswcL3UZlJgQ_LNH2b1xHbOyfz-oBh9_4nlay119oA0O1_yiPai9i1oP1gO$> > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel__%3B!!PxiZbSOawA!PCH5e74i_iyFpJzRK4TpZKocPg4CQic6KN2P-81NJnswcL3UZlJgQ_LNH2b1xHbOyfz-oBh9_4nlay119oA0O1_yiPai9i1oP1gO%24&data=05%7C01%7Cjennifer.wokaty%40sph.cuny.edu%7Cb5487ea55dcd49d6879208dbc9c5303c%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638325620989566974%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=pW2Tmh5ffm0nU%2B3GsIaGdlyOPse%2FZzpcOUHrwFRK52I%3D&reserved=0<https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/bioc-devel__;!!PxiZbSOawA!PCH5e74i_iyFpJzRK4TpZKocPg4CQic6KN2P-81NJnswcL3UZlJgQ_LNH2b1xHbOyfz-oBh9_4nlay119oA0O1_yiPai9i1oP1gO$> [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
